Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03583 ATGAGAGGTATGGATATTAAGGTTCAGAAAGGTGGGTCTGCAAAGGAAAATGAGACAGGGGTAAGAAAAGGTCCTTGGACGTTAGAAGAGGACACCATTCTGGTTGATTACATTACAATACACGGTGAAGGTCACTGGAATACCCTCGCATCTTCTGCAGGTTTGAGGAGAAGTGGTAAAAGTTGTAGATTAAGGTGGCTAAACTACTTGCGTCCCGATGTACGTCGTGGAAATATCACACTTCAAGAACAAATATTGATTCTTGACCTCCACTCTCGCTGGGGCAATAGGTGGTCGAAAATTGCACAACATCTACCGGGTAGAACGGACAATGAAATAAAAAACTATTGGAGAACAAGAGTGATCAAGCAAGCAAAGCAACTCAAATGTGATGTCAATAGCAAACAGTTCAGAGATGTATTGCGGCACGTTTGGATGCCCCGATTACTCGAACAAATTCAACCTGCACCGCAATTTCCCGACACTAATAATCCAAACGGATCAAATATCCTTCTTCACCAAAACACATTGCAAAGTTCAGTTTCAGGAATCAGGGGTATTTCCTCGGACTCTTCATCGGTAGAATTCCAAGTTACTTCGAATTCGGACAAAAATGATTCTTTGGAGCTTTTAGGCCATGATGGTTCGAAAGTATGGTCAAGTTTCAACAACCAGGTTTCAGAACAGGGGAAGAGTGGTGCTAGTGATGGTGACTCGTTGGAGAGTATGTGGAACGATGAGAACATGTGGTTTTTGCAACAACTTTATGAAGATGTTGAAATAAAATACAATTTGCTTGCGTGA 804 0.4192 MRGMDIKVQKGGSAKENETGVRKGPWTLEEDTILVDYITIHGEGHWNTLASSAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDVLRHVWMPRLLEQIQPAPQFPDTNNPNGSNILLHQNTLQSSVSGIRGISSDSSSVEFQVTSNSDKNDSLELLGHDGSKVWSSFNNQVSEQGKSGASDGDSLESMWNDENMWFLQQLYEDVEIKYNLLA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03583 267 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Mepo4g03583 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 70 IPR017930 -
Mepo4g03583 267 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Mepo4g03583 267 SMART sant 75 123 IPR001005 -
Mepo4g03583 267 SMART sant 22 72 IPR001005 -
Mepo4g03583 267 MobiDBLite consensus disorder prediction 1 22 - -
Mepo4g03583 267 Gene3D - 80 121 - -
Mepo4g03583 267 FunFam MYB transcription factor 80 143 - -
Mepo4g03583 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Mepo4g03583 267 CDD SANT 80 119 IPR001005 -
Mepo4g03583 267 FunFam Myb transcription factor 23 75 - -
Mepo4g03583 267 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 223 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mepo4g03583 267 Gene3D - 23 75 - -
Mepo4g03583 267 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Mepo4g03583 267 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Mepo4g03583 267 CDD SANT 25 70 IPR001005 -
Mepo4g03583 267 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03583 Mepo-Chr4 45270769 45272179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03583 21 164 MYB Transcription Factor Family AT1G48000 72.917 1.51e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo4g03583 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03583 K09422 - gmx:778065 312.768