Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03568 ATGAGTTGTTTCGGCTGTTGCGAAGAGGATGAGTTTCACAAGGCTGCTGAAAGTGGTGGACCATATGTTGTAAAAAACCCAGCAGGTAATGATGGAAATTATCATGCTTCTGAGACTGCAAAGCAGGGAGCTCAGACTGTTAAAGTGCAGCCCATTGAAGTTCCTGAGATACAGGCAGATGAACTGAAAGAAGTTACAGATAACTTTGGACAAGATTCTCTTATTGGAGAGGGATCCTATGGAAGAGTATATTACGGAGTTCTTAAAAGTGGGCAGGCTGCAGCAATCAAGAAGTTAGATGCCAGTAAACAGCCTGATGAGGAATTCTTGGCCCAGGTTTCAATGGTATCAAGGCTGAAACACGATAACTTTGTCCAATTGCTTGGATATTGCATTGATGGAAACTCCCGTATTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTTCATGACATTTTACATGGCAGAAAAGGAGTTAAAGGAGCTCAGCCTGGTCCAGTTTTGACATGGGCACAGAGAGTAAAAATTGCTGTAGGGGCTGCAAGAGGGCTTGAATACTTGCATGAGAAGGCTGATCCCCATATTATCCACCGGGACATCAAGTCAAGCAATGTGCTAATCTTTGACGATGATGTTGCAAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCAGACATGGCTGCTCGTCTTCATTCCACCCGTGTCCTTGGAACCTTTGGTTACCATGCACCTGAATATGCAATGACCGGACAGTTGAATGCTAAAAGTGATGTATACAGTTTTGGCGTTGTCCTTCTGGAACTTTTGACTGGAAGAAAACCTGTTGATCATACACTACCACGTGGACAGCAGAGTCTGGTTACTTGGGCTACACCAAAACTCAGTGAGGATAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCAAAAGCTGTTGCCAAGGTGTTCACTCTCTTTAGGATATTTTCTCCCTCATTTTTATTTTATTTGGCCATTTTATATGTTTGGAAGTGTTCCGTTGCTTATATTTTATTTGAATATAATATAAGCTCACTAGACCACGTAATTCTTATATTTTGTTTAAATAGTACATACTATGCAAGAGACCGAGGTTTGATTAGTTGA 1140 0.4149 MSCFGCCEEDEFHKAAESGGPYVVKNPAGNDGNYHASETAKQGAQTVKVQPIEVPEIQADELKEVTDNFGQDSLIGEGSYGRVYYGVLKSGQAAAIKKLDASKQPDEEFLAQVSMVSRLKHDNFVQLLGYCIDGNSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAVAKVFTLFRIFSPSFLFYLAILYVWKCSVAYILFEYNISSLDHVILIFCLNSTYYARDRGLIS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03568 379 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
Mepo4g03568 379 SMART serkin_6 69 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo4g03568 379 Gene3D Transferase(Phosphotransferase) domain 1 144 327 - -
Mepo4g03568 379 Pfam Protein tyrosine and serine/threonine kinase 73 279 IPR001245 GO:0004672|GO:0006468
Mepo4g03568 379 ProSiteProfiles Protein kinase domain profile. 69 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo4g03568 379 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Mepo4g03568 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Mepo4g03568 379 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Mepo4g03568 379 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 5 322 - -
Mepo4g03568 379 FunFam pto-interacting protein 1 145 328 - -
Mepo4g03568 379 SUPERFAMILY Protein kinase-like (PK-like) 48 328 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03568 Mepo-Chr4 45131478 45135894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03568 60 323 Receptor kinase-like Gene Family AT4G02010 52.239 8.26e-84 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Mepo4g03568 PK_Tyr_Ser-Thr 2.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03568 K13436 - gmx:100808383 617.076