Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03542 ATGGCATCTTTGTTCTCAACACAGTTGGTGCAGAGTCAGAACCTTCTTTCTGGTTTCAATGCTGTCCAGGGGAAGTCGCATGTAGTCTGTAGCAGTACCAGGTCACACCTTGGATGCAGTAAATTGTCATCGGGATATCATTACGCAGCGAGGCTTTCTGTGTCACAACAATCTAAAGTGAAATCAATCACTTCTCGGAGAGTAACATGCACTAGTAGTGCTAATGCTGCAGATCTTCAAGCCAAAGTAACAAACAAGGTTTTCTTTGATATAGTAATTGGAGGTGAATCTGCTGGAAGGATTGTTATTGGCCTATTTGGAGATGTTGTTCCCAAAACAGTTGAAAATTTCCGAGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGATTCCACCTTCCATCGCATAATCAAAGGTTTCATGATTCAGGGAGGGGACTTCACAGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAATTTTGCTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTGCTAATACTAACGGCAGTCAATTTTTTATCTGCACTGTACCGACTCCATGGTTGGACAATCGCCATGTTGTATTTGGACATGTCATTGATGGAATTGATGTTGTGAGGACACTTGAATCACTGGAGACAAGCAGCTACAACAATGGTCCCTTGAAATCATGCAAAATTGTTAACTCTGGAGAACTTCCTCTAGATGGTTGA 756 0.422 MASLFSTQLVQSQNLLSGFNAVQGKSHVVCSSTRSHLGCSKLSSGYHYAARLSVSQQSKVKSITSRRVTCTSSANAADLQAKVTNKVFFDIVIGGESAGRIVIGLFGDVVPKTVENFRALCTGEKGYGYKDSTFHRIIKGFMIQGGDFTEGNGTGGVSIYGGKFEDENFALKHVGPGVLSMANAGANTNGSQFFICTVPTPWLDNRHVVFGHVIDGIDVVRTLESLETSSYNNGPLKSCKIVNSGELPLDG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03542 251 CDD cyclophilin_ABH_like 86 245 - -
Mepo4g03542 251 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 86 247 - -
Mepo4g03542 251 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 88 246 IPR002130 GO:0000413|GO:0003755
Mepo4g03542 251 FunFam Peptidyl-prolyl cis-trans isomerase 73 251 - -
Mepo4g03542 251 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 129 146 IPR020892 GO:0003755|GO:0006457
Mepo4g03542 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 105 120 IPR002130 GO:0000413|GO:0003755
Mepo4g03542 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 205 220 IPR002130 GO:0000413|GO:0003755
Mepo4g03542 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 192 204 IPR002130 GO:0000413|GO:0003755
Mepo4g03542 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 177 192 IPR002130 GO:0000413|GO:0003755
Mepo4g03542 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 146 IPR002130 GO:0000413|GO:0003755
Mepo4g03542 251 Gene3D - 74 250 IPR029000 -
Mepo4g03542 251 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 95 244 IPR002130 GO:0000413|GO:0003755
Mepo4g03542 251 SUPERFAMILY Cyclophilin-like 79 247 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03542 Mepo-Chr4 44851899 44854932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03542 99 244 U-box Gene Family AT5G67530 44.898 1.90e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03542 K03768 - gmx:100526955 354.755