Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03535 ATGTCTTTTCCTAATGCTCATGGGTTGCCACAATGGTGTAAAAACGAGACGCTTGTAACACTCTCAAAGTCACATGTTCGAATCCTTCATGTGTTAGTTTTTGTTAATAAAGGAACAAAAACGATGGATAACAACGTTGGAGGAAGTTCCTTTAATAACGTTGAAAACGGAGGCATAATAAAGGAACAAGATAGGTTGTTACCAATTGCAAATGTTGGGAGGATAATTAAGCAGATATTACCACAGAATGCAAAATTCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGTGTCAGAGTTTATAAGCTTTGTGAAAAGTGAGGCATCAGAGAAATGCAGGAAGGAAAGGAGAAAGACAGTGAATGGTGATGATATCTGTTGGGCTTTGGGGACACTTGGTTTATAA 408 0.3775 MSFPNAHGLPQWCKNETLVTLSKSHVRILHVLVFVNKGTKTMDNNVGGSSFNNVENGGIIKEQDRLLPIANVGRIIKQILPQNAKFSKESKETMQECVSEFISFVKSEASEKCRKERRKTVNGDDICWALGTLGL 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03535 135 Gene3D Histone, subunit A 59 135 IPR009072 GO:0046982
Mepo4g03535 135 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 46 134 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mepo4g03535 135 SUPERFAMILY Histone-fold 25 134 IPR009072 GO:0046982
Mepo4g03535 135 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Mepo4g03535 135 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Mepo4g03535 135 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 66 130 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03535 Mepo-Chr4 44816629 44817036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03535 55 135 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.543 4.07e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mepo4g03535 CBFD_NFYB_HMF 1.4e-24 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03535 K08065 - mtr:11422870 179.104