Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03524 ATGGCTTCTTCCATTGGAACTTCTTCCATAAACAAAACCCAACTTCTCAATACACCAACTTCATTTTCCTTTTCACTCTACAACACCACTTCCCGTCTCAACACCCTTCTCCGACTCCGTCCTAACCACAAAACCCCTACTGTTTCCTTCGTTATTTCTGCTATTGCCACCCCCAACGCTCCTATCCTCACCCCTCAAGAAGCCTTCAAGGGTTTTGCTTTCGATGACGCTAACGACCAACTTAGTCATGTTCCTGTTGCCGTCAGCACAAACGAACTTGATATTTCCAAGCTTCGTTTTCCTTCTCAGCTTGTTGACTCGCTTCAGAGACGTGGAATTACTAGTCTTTTCCCCATTCAGAGAGCTGTGTTGCTGCCTGCATTAGAAGGTAGAGATATCATTGCTCGTGCAAAGACTGGAACTGGGAAGACATTAGCATTTGGAATTCCAATTATCAAGGGTCTCACTGAGAATGAACAAAGCAATATGAGGCGGTCTGGTCGGCTTCCTAAAGTACTAGTCCTTGCACCAACTAGGGAGTTAGCAAAGCAAGTAGAGAAGGAGATAAAAGAATCTGCACCTTATTTAAACACAGTTTGTGTTTATGGTGGTGTTTCTTATGATATTCAGAGGAATGCACTTTCACGCGGTGTTGATGTTGTGGTTGGAACACCTGGGAGACTAATTGACCTCATAAATGGGAGAACTCTTAAACTTAGTGAAATTCAGTATTTGGTACTTGATGAAGCTGATCAAATGCTTGCTGTTGGGTTTGAGGAGAATGTGGAAGAAATTTTAGAAACCATCCCATCTCAGCGCCAGATTATGCTTTTCTCTGCAACCATGCCGGGTTGGGTCAAGAAGTTGTCAAGAAAACATTTGAACAATCCATTGACTATTGATTTGGTCGGTGACAGAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTGTATCAGCCACTGCATCATCAAAGCGGAGAATTCTTTATGGTCTTATAAGTGCCTACGCAAACGGTGGGAAGACCATTGTTTTCACACGGACAAAAAGGGATGCGGATGAAATATCATTGTCACTAACAGATAGCATAGCTTCTAAACCACTACACGGTGATATCTCTCAGTATCAGAGAGAGAAAACATTGAATGGTTTTCGGCAAGGAAGATTCACAGTGCTTGTTGCTACCGACGTTGCTTCTCGTGGACTAGATATTCCCAATGTTGATTTGATTATACATTATGAACTTCCCGATGGTCCCGAGACTTTTGTTCATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGTACAGCTGTTGTAATGTACACCACTTCCCAGAAAAGAACTATTATATCCTTTGAGCGCGAAGTAGGCTGCACGTTTGAATTTATTAGTCCACCACCTATGCAAGATTTACCCGAATCATCTACCAGGCAAGTTGTTCCTACACTTGATAGAGATAGAAGTAATTATAGAGGATCTAGGGATCAAAGTGGTTTTAGAACCGGTGGGGATGAATGGCGAACTGGAGGTGGACGATCAAGTGGGTATTCGTCATCAAACAGATCTCCGTCTTCAGGTTCTAGGGATCAGAGAGGTTTTAAAACCGGTGGGGATGACTGGCTAACTGGAGGTGGACGATCAAGTGGGTATTCGTCATCAAACAGATCTTCATCGTCATCAGGTTCTAGGGAGAGAGGTTTTCAAACCGGTGGTGATGACTGGTTAATTGGAGGTAGACGATCAAGCGGGTATTCATCATCAAACAGATCTTCATCACCAAACAGGAGAGGTAGTTATGGAGGGAGCTGTTTTAGTTGTGGACAACCAGGGCATCGGGCGTCAGATTGTCCCAATTAA 1863 0.4369 MASSIGTSSINKTQLLNTPTSFSFSLYNTTSRLNTLLRLRPNHKTPTVSFVISAIATPNAPILTPQEAFKGFAFDDANDQLSHVPVAVSTNELDISKLRFPSQLVDSLQRRGITSLFPIQRAVLLPALEGRDIIARAKTGTGKTLAFGIPIIKGLTENEQSNMRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYDIQRNALSRGVDVVVGTPGRLIDLINGRTLKLSEIQYLVLDEADQMLAVGFEENVEEILETIPSQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLVGDREEKLAEGIKLYAVSATASSKRRILYGLISAYANGGKTIVFTRTKRDADEISLSLTDSIASKPLHGDISQYQREKTLNGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGTAVVMYTTSQKRTIISFEREVGCTFEFISPPPMQDLPESSTRQVVPTLDRDRSNYRGSRDQSGFRTGGDEWRTGGGRSSGYSSSNRSPSSGSRDQRGFKTGGDDWLTGGGRSSGYSSSNRSSSSSGSRERGFQTGGDDWLIGGRRSSGYSSSNRSSSPNRRGSYGGSCFSCGQPGHRASDCPN 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03524 620 CDD SF2_C_DEAD 314 443 - -
Mepo4g03524 620 SMART helicmild6 354 434 IPR001650 -
Mepo4g03524 620 MobiDBLite consensus disorder prediction 471 485 - -
Mepo4g03524 620 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 481 IPR001650 -
Mepo4g03524 620 Gene3D - 94 304 IPR027417 -
Mepo4g03524 620 SUPERFAMILY Retrovirus zinc finger-like domains 589 620 IPR036875 GO:0003676|GO:0008270
Mepo4g03524 620 MobiDBLite consensus disorder prediction 513 533 - -
Mepo4g03524 620 MobiDBLite consensus disorder prediction 547 568 - -
Mepo4g03524 620 Pfam Zinc knuckle 604 620 IPR001878 GO:0003676|GO:0008270
Mepo4g03524 620 MobiDBLite consensus disorder prediction 465 620 - -
Mepo4g03524 620 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 92 461 - -
Mepo4g03524 620 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 300 IPR014001 -
Mepo4g03524 620 MobiDBLite consensus disorder prediction 582 603 - -
Mepo4g03524 620 SMART ultradead3 112 317 IPR014001 -
Mepo4g03524 620 CDD DEADc 104 301 - -
Mepo4g03524 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 455 IPR027417 -
Mepo4g03524 620 Pfam DEAD/DEAH box helicase 117 289 IPR011545 GO:0003676|GO:0005524
Mepo4g03524 620 ProSiteProfiles Zinc finger CCHC-type profile. 605 620 IPR001878 GO:0003676|GO:0008270
Mepo4g03524 620 MobiDBLite consensus disorder prediction 489 503 - -
Mepo4g03524 620 SMART c2hcfinal6 604 620 IPR001878 GO:0003676|GO:0008270
Mepo4g03524 620 Gene3D - 595 620 - -
Mepo4g03524 620 Gene3D - 317 493 IPR027417 -
Mepo4g03524 620 FunFam ATP-dependent RNA helicase RhlE 86 303 - -
Mepo4g03524 620 Pfam Helicase conserved C-terminal domain 326 434 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03524 Mepo-Chr4 44734708 44739125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03524 119 473 Eukaryotic Initiation Factors Gene Family AT1G72730 35.890 8.41e-63 211