Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03515 ATGGGAAGACATTCTTGCTGCTACAAGCAGAAGTTAAGGAAAGGACTTTGGTCTCCAGAGGAAGATGAGAAGCTTTTGAATTACATTACCAAGCATGGTCATGGATGTTGGAGTTCTGTCCCCAAACTAGCAGGTTTGCAAAGGTGTGGGAAGAGTTGCAGATTAAGGTGGATAAATTACTTGAGGCCTGATTTGAAAAGAGGAGCATTCTCACAACAAGAAGAGAATTTGATCATTGAACTTCATGCAGTACTTGGTAACAGGTGGTCTCAGATTGCAGCACAATTACCAGGAAGAACAGACAATGAGATTAAAAATCTATGGAATTCATGTCTCAAGAAGAGGTTGAGACAAAGTGGCATTGATCCAAACACTCACAAACCACTCTCTGAGGTTGAAAATGACAATGAAAAATCACTCACATCCAACAAAACCAATCAAAAAGCTTCAGTTTCATCTAATGAAGTTATGAGTTTGATGATTGAACCTACAAAACCTTCTATAGATGGATACCCTCTAGAAGTTTCTACTACCTCAAAGATCAACAACAGTAGTAGCAGCAGCCATGAATTATTCCTAGATACCAGGTTTGGTAGCACCTCAAGTTATTTTTCTTTCCAGAACTTGAACTATGGATCAAACATAGGAATTTCTGAAAATCCAAATGCATCTATTTGTTTCACACCAACTTCAACTTCTTCACAAATTATGTCAGATACAAATTCTGTTATAACTTCCAATATGCTCCATTCTGTATCTCCCTCAATTTTCTCAACTCCAACACATGTTAAGCCAACTGTTTCTGTTTCCTCGGACGGAGTTCATAACTGGGAAGCAAGTAACTACAGCAACATTAACAACACAAACAACGGCGCTTTACCGTTACAAGAAGAAATGAAATGGTCTGAGTATCTTAACACACCGTTTCTTATGCAGAATCAACCTTCTCCATCAATGTACACTGAGGCTAAACCAGAAACAGGTTTCATAACAGATGAATCATGTACTAGTTGGCAGCAGCAGCAACAACAACAAAATTTTCAACTTTCTGATATATATAGCAAGGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACTATGTAG 1107 0.3821 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPNTHKPLSEVENDNEKSLTSNKTNQKASVSSNEVMSLMIEPTKPSIDGYPLEVSTTSKINNSSSSSHELFLDTRFGSTSSYFSFQNLNYGSNIGISENPNASICFTPTSTSSQIMSDTNSVITSNMLHSVSPSIFSTPTHVKPTVSVSSDGVHNWEASNYSNINNTNNGALPLQEEMKWSEYLNTPFLMQNQPSPSMYTEAKPETGFITDESCTSWQQQQQQQNFQLSDIYSKDLQRFSVAFGQTM 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03515 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mepo4g03515 368 MobiDBLite consensus disorder prediction 119 153 - -
Mepo4g03515 368 SMART sant 66 114 IPR001005 -
Mepo4g03515 368 SMART sant 13 63 IPR001005 -
Mepo4g03515 368 FunFam Myb transcription factor 11 67 - -
Mepo4g03515 368 Gene3D - 68 153 - -
Mepo4g03515 368 CDD SANT 17 61 IPR001005 -
Mepo4g03515 368 Gene3D - 11 67 - -
Mepo4g03515 368 MobiDBLite consensus disorder prediction 139 153 - -
Mepo4g03515 368 FunFam MYB transcription factor 68 140 - -
Mepo4g03515 368 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Mepo4g03515 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mepo4g03515 368 CDD SANT 69 109 IPR001005 -
Mepo4g03515 368 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mepo4g03515 368 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mepo4g03515 368 PANTHER MYB DOMAIN PROTEIN 55 1 322 - -
Mepo4g03515 368 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mepo4g03515 368 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03515 Mepo-Chr4 44626918 44628545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03515 1 368 MYB Transcription Factor Family AT1G09540 47.677 1.21e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo4g03515 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03515 K09422 - gmx:778072 467.618