LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo4g03513	ATGCCACTTTATGAGTTATACCGTTTGGCAAGAGAGAAGCTTGATAATGAGACTAACGGCGCAAGTGTAGCGGATCAACCTTCGTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGCCAAGGTCAATCAAGTAGAGGTAGAAAGAGTCCATCTTGTAGGAGTTTGCCATCTCACTGTTTACCATCTCATAGTCCTAGAGGTCGAGATAAAGATGTAGGAGGAGGATTTAGTAACAACAATCCAAAGATAGGAAAGTTTGGTGATTTAGACTCTGGATTGAATGAGATTCCAATGTCGGTGCCATCTCGCGAAGTAGATGAAATGATGCCTTGGTTGGATTATTCAATGGATGGCTCTTTGCAACATGAATATGGTTCTGATTTCTTTCATGAACTCACGGAGAACGACCTTCCTGCCTCGAATAGTTTTACTCTATTGGATAAAAGAAGTAATGGGAATCAGATATTTAGGGACTCTCATAAAAATTCTGCAGAACCAATGAATGTTTCTAAGGGTTCTTCAGCTGAACAGGTTGTTGAGACTGCAAGACATAAAGCTAGTGCCAGTCAGTTATATCCTCCATCATCGAATCAATGTCAAACAACATCTGTAACTGTTAGATCTAGGGCATCGGATATAACCGAAAATAATAATGTTAGTAGTGGTAACCAGGACGTGCCTTATGGGGATATTACTCGCATTCCATCTTCCTCGAGCGATTTTTCTAGCTTAAAAGCGCAGAAGCAAGATCCTATAATGCCTGGCAATGGTTCCAGTGTAATGAATTTTTCCCATTTTGCAAGGCCTGCAGCTATTGTGAGAGCTAATCTTCAGAACATTGGCTTGAAGTCTGGTTTGAATTCAGCTTCAGCAAGATCAGATATTATGGGAGTTAAGAATAAAGGTGCTGCTTCGACTAGCAGCAATCCTCCTGACTCAACTCTTGTTAATCCAAGCGATGAGTGTTCAAAGGAACCGGAAATGCGCTGTCATAAGGTGGTAGAGCCATCCAAGGCTGATTTGAAACCTTTGCAGACGAAATCACTTGAACCGAATGCTGTAGCTACTAAACAATCAAAGCCTGCTAACAAAGAGAATGGAATTAAGAATGATCAACCTTCCATTCAAGTTCTTGGTGACATTGGTGCTAAAGGACACACAGCTGCTGAAAAAGGCATGGAGGTGGCGGTAGCCTCTTCTTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGCTCGGATGATCCAAATCGAGATTTGAAACGGAAAAGTAGAGACACTGAGGACTCTGAATGCCATAGTGAAGATGTTGAGGATGAATCAGTGGGAGTTAAAAAAGGAGCGGCTGGACGAGGAGTTGCAGGTTCCAAAAGAAGCCGTGCTGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTGCAAGAACTCATACCTAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCGATGGGAGCTGGTTTATATATGCCTCAAATGATGTTACCTGCTGGAATTCAGCACATGCATGCACCACACATGGCTGCATTTTCACAGATGGGCGTTGGCATGCATATGGGGTTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAGCGGCGGGCCGTCTAGATTTCCAATGATTCAAGTGCCTCAGATGCAAGGAAATCATATACCCGTTGCACATATGTCTGGACCCTCTGCTATGCATGGGATGGCCAGATCGAATACTCAAGGGTTTGGACTTCCGGGACAGGGAATTTCCATGCCAATGCCGCATGCTCCGGTATTTCCTTTTTCAGGAGGGCCTCTTATGAACTCATCCGCTCCGGGTCCGTCTGTGTATGGATCCACAGGACATGTTGAAGCTGTGAATCCGGCTTCAGCGTGTGGCTCAAAAGATCGAAGGCCAGATGTGGACTCGCAAATTAAGCAAAACACTGCTGGTCGTGACTCTACAAGCCAGGTCCCTAACCAGTCAACTTTGGTGCATAATGGTGGCCATGCTTCAGTGGCTGATGACAGTGAAGCTGCTAATCCTGGCAATATAACTTTGTGA	2160	0.4426	MPLYELYRLAREKLDNETNGASVADQPSSPENDFFELVWESGQISSQGQSSRGRKSPSCRSLPSHCLPSHSPRGRDKDVGGGFSNNNPKIGKFGDLDSGLNEIPMSVPSREVDEMMPWLDYSMDGSLQHEYGSDFFHELTENDLPASNSFTLLDKRSNGNQIFRDSHKNSAEPMNVSKGSSAEQVVETARHKASASQLYPPSSNQCQTTSVTVRSRASDITENNNVSSGNQDVPYGDITRIPSSSSDFSSLKAQKQDPIMPGNGSSVMNFSHFARPAAIVRANLQNIGLKSGLNSASARSDIMGVKNKGAASTSSNPPDSTLVNPSDECSKEPEMRCHKVVEPSKADLKPLQTKSLEPNAVATKQSKPANKENGIKNDQPSIQVLGDIGAKGHTAAEKGMEVAVASSSVCSGNGADRGSDDPNRDLKRKSRDTEDSECHSEDVEDESVGVKKGAAGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPAGIQHMHAPHMAAFSQMGVGMHMGLGMGYGMGMPDMSGGPSRFPMIQVPQMQGNHIPVAHMSGPSAMHGMARSNTQGFGLPGQGISMPMPHAPVFPFSGGPLMNSSAPGPSVYGSTGHVEAVNPASACGSKDRRPDVDSQIKQNTAGRDSTSQVPNQSTLVHNGGHASVADDSEAANPGNITL	719

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mepo4g03513	719	SMART	finulus	472	521	IPR011598	GO:0046983
Mepo4g03513	719	MobiDBLite	consensus disorder prediction	659	719	-	-
Mepo4g03513	719	MobiDBLite	consensus disorder prediction	356	380	-	-
Mepo4g03513	719	MobiDBLite	consensus disorder prediction	407	475	-	-
Mepo4g03513	719	MobiDBLite	consensus disorder prediction	418	451	-	-
Mepo4g03513	719	MobiDBLite	consensus disorder prediction	307	382	-	-
Mepo4g03513	719	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	463	527	IPR036638	GO:0046983
Mepo4g03513	719	CDD	bHLH_AtPIF_like	466	528	IPR047265	-
Mepo4g03513	719	FunFam	Basic helix-loop-helix transcription factor	461	524	-	-
Mepo4g03513	719	Pfam	Helix-loop-helix DNA-binding domain	470	516	IPR011598	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo4g03513	Mepo-Chr4	44588079	44591672	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo4g03513	401	595	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G09530	59.000	1.21e-54	194

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Mepo4g03513		HLH	7.9e-14	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo4g03513	K12126		-	gmx:100794974	952.584

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