LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo4g03497	ATGGCATCAGTTGGTGTTGCACCAACTTCAGGTTTTAGAGAAGCCCTTGGTGATGGTGAAATTGGTGTTGATGATATATTGCCAGAGGAAATGAGTGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACCGTTGTTGACGGCAATGGAACGGAGACAGGACATATCATTGTCACTACCATTGGTGGTAGAAATGGTCAGCCAAAGCAGACTATAAGCTATATGGCAGAGCGTGTTGTAGGACATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACCGGTGAAACCGTTGCTATCAAAAAGGTTCTTCAAGACAAGAGGTATAAGAACCGGGAATTGCAAACAATGCGACTGCTTGATCACCCAAATGTTGTCTCTTTAAAGCATTGTTTCTTTTCAACCACCGAAAAGGATGAACTATACCTGAATTTGGTACTTGAGTATGTTCCTGAAACAGTTCATCGTGTGATTAAGCATTACAGCAAGTTGAACCAAAGGATGCCAATGATTTATGTGAAGCTCTATACATACCAGATCTTTAGAGCATTATCTTATATTCATCGTTGCATTGGAGTCTGTCATCGGGATATCAAGCCTCAAAATCTATTGGTCAATCCACACACCCACCAGGTTAAATTATGCGACTTCGGAAGTGCGAAAGTCTTGGTTAAAGGCGAACCAAATATATCGTATATATGTTCTAGATACTACAGAGCACCCGAGCTTATTTTTGGAGCAACTGAATATACTACAGCTATTGATGTATGGTCTGTTGGTTGTGTTTTGGCTGAGCTGCTGCTTGGACAGCCATTGTTCCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTCTGGGAACTCCGACAAGAGAAGAAATTAAATGCATGAATCCGAATTATACCGAATTTAAATTCCCTCAAATCAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTGCAGAAGCTGTTGATTTGGTATCAAGATTATTACAATACTCCCCAAACCTGCGGTGCCAAGCTTTAGATTGCTTGACCCATCCTTTCTTCGATGAACTTCGTGACCCGAATGCTCGTTTGCCAACTGGCCGTTTCCTGCCACCACTATTTAACTTCAAACCTCACGAACTGAAAGGAGTTCCAGTCGAGACCTTGATGAAATTGGTTCCAGAGCATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTAA	1236	0.4248	MASVGVAPTSGFREALGDGEIGVDDILPEEMSDMKIRDDREMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYSKLNQRMPMIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPAEAVDLVSRLLQYSPNLRCQALDCLTHPFFDELRDPNARLPTGRFLPPLFNFKPHELKGVPVETLMKLVPEHARKQCPFLGL	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo4g03497	411	FunFam	Glycogen synthase kinase-3 beta	59	154	-	-
	Mepo4g03497	411	CDD	STKc_GSK3	70	362	IPR039192	-
	Mepo4g03497	411	ProSitePatterns	Protein kinases ATP-binding region signature.	81	105	IPR017441	GO:0005524
	Mepo4g03497	411	SMART	serkin_6	75	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo4g03497	411	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	39	405	-	-
	Mepo4g03497	411	ProSiteProfiles	Protein kinase domain profile.	75	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo4g03497	411	FunFam	Shaggy-related protein kinase kappa	155	403	-	-
	Mepo4g03497	411	SUPERFAMILY	Protein kinase-like (PK-like)	74	385	IPR011009	-
	Mepo4g03497	411	Gene3D	Transferase(Phosphotransferase) domain 1	155	403	-	-
	Mepo4g03497	411	Gene3D	Phosphorylase Kinase; domain 1	59	154	-	-
	Mepo4g03497	411	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	196	208	IPR008271	GO:0004672\|GO:0006468
	Mepo4g03497	411	Pfam	Protein kinase domain	75	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo4g03497	Mepo-Chr4	44351541	44355924	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo4g03497	81	366	MAP Kinase Gene Family	AT3G45640	33.898	4.18e-54	182

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Mepo4g03497		Pkinase	2.4e-64	CL0016