Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03480 ATGGAAGGCAACAAGACTATGGTTCCATCATCATCACCTTCAGATGCCAAACTCACCAATGGTACTCTTGTGTCCAATGGGAAACAGCACCCTTCTCCTGATGACTTAGAGATAGAGACCTTCTATGTCAAACTAACTGAAGTTTTGGACTCCTCAGGCTTCAATCTCATTTTCAATGTCCGAGAGACAATCATAGACTTGTACCTGTTTTACTTGGAAGTCACTAGAAGAGGAGGTTTTCACCAGGTTGGTCTTCAAAACAAATGGGCTGAAGTTGTCTCTGCATTGAAATTGGAAGGCAGCAATGCAATGTTATCTGCTCAAGTTGAAAAGATCTATGCAACACTTCTATACAAATTTGAGAAATTGTACTTCTACAGGTTTCCTGCAACCGGCAGCGCCCAAGGTACCCTTAAAAGGAAGCAGAACTCGACTACTGGTTTATCTCAATTAATGGCTGATGATGATAATCTGAAGGTGGAAAAGGTGTCCAAGGACTACTCTAGCCAAATGACAGGAGCCGGCTGTCAAGAACCTCGGGTGCTTCTACAAGCACCCTCAAATGACAAAGAAAAGAAGAAACAAGACAAAGAAAAGAAGAAGCGACGAGGTCCTCCTACTGGACAAAGTGGATATCAAATATTCCTCAAGCATGAATGTGCTCGATTAAAAGCTCATGATCCGGATATTGATGGCAAAAAAGTCCTACGCATGGCTGTTGATGCTTGGCAGAAGATGTCTGCCACTGAAAAACAGCCATATGTGGAGGAAAGCAAGAAGATAAAGGAAAAAAAGAAGGAAGCAGTGATCAATGACAATAAACAGATGAGCACTGAAGATCTTGAGAAGGATGAAAAGAAGAGCACTGAAGATCTTAAGAAGGAGGAAAAGAGGCCTAGTGTGTGTGGTGACTACAACTGTGTAACTTTGCAGCCTCTAACAAATCACTCTTTTGTCAACAATGCAGCTGTGGACTTGGCTCTTAAAATGACTGAAAAAGCACTCAAGGATCCCTTCTTCCCAGTTGATTTGGATACTTACTGTTCGTTAGAAATGCTAAATGGGAAATCCAAATGA 1077 0.4178 MEGNKTMVPSSSPSDAKLTNGTLVSNGKQHPSPDDLEIETFYVKLTEVLDSSGFNLIFNVRETIIDLYLFYLEVTRRGGFHQVGLQNKWAEVVSALKLEGSNAMLSAQVEKIYATLLYKFEKLYFYRFPATGSAQGTLKRKQNSTTGLSQLMADDDNLKVEKVSKDYSSQMTGAGCQEPRVLLQAPSNDKEKKKQDKEKKKRRGPPTGQSGYQIFLKHECARLKAHDPDIDGKKVLRMAVDAWQKMSATEKQPYVEESKKIKEKKKEAVINDNKQMSTEDLEKDEKKSTEDLKKEEKRPSVCGDYNCVTLQPLTNHSFVNNAAVDLALKMTEKALKDPFFPVDLDTYCSLEMLNGKSK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03480 358 Coils Coil 278 298 - -
Mepo4g03480 358 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 205 273 IPR009071 -
Mepo4g03480 358 SMART ARID_2 32 121 - -
Mepo4g03480 358 MobiDBLite consensus disorder prediction 260 295 - -
Mepo4g03480 358 Pfam ARID/BRIGHT DNA binding domain 39 121 IPR001606 GO:0003677
Mepo4g03480 358 MobiDBLite consensus disorder prediction 1 29 - -
Mepo4g03480 358 CDD HMG-box_SF 209 255 - -
Mepo4g03480 358 Gene3D - 25 143 IPR036431 GO:0003677
Mepo4g03480 358 SMART hmgende2 204 274 IPR009071 -
Mepo4g03480 358 ProSiteProfiles ARID domain profile. 35 125 IPR001606 GO:0003677
Mepo4g03480 358 SUPERFAMILY HMG-box 192 264 IPR036910 -
Mepo4g03480 358 Gene3D High mobility group box domain 186 271 IPR036910 -
Mepo4g03480 358 SMART bright_3 36 126 IPR001606 GO:0003677
Mepo4g03480 358 MobiDBLite consensus disorder prediction 1 31 - -
Mepo4g03480 358 Pfam HMG (high mobility group) box 206 268 IPR009071 -
Mepo4g03480 358 MobiDBLite consensus disorder prediction 185 205 - -
Mepo4g03480 358 SUPERFAMILY ARID-like 30 125 IPR036431 GO:0003677
Mepo4g03480 358 CDD ARID 39 121 - -
Mepo4g03480 358 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 33 132 - -
Mepo4g03480 358 MobiDBLite consensus disorder prediction 169 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03480 Mepo-Chr4 44171916 44174825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03480 41 266 ARID Transcription Factor Family AT3G13350 24.806 1.03e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mepo4g03480 ARID 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03480 - - mtr:120577736 586.26