Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03479 ATGGAAGGCAACAAGACTATGGTTCCATCATCACCTTCAGATACCAAACTCACCAATGGGAAACAATACTCTTCTCCTGATGACTTAGAGATAGAGACCTTCTATGTCAAACTCACTCAAGTGTTGGATTCCACTGGGTTCAATCTCATGTTCAATGTCCGAGAAACATCTTTAGACTTGTATCTGCTTTACTTGGAAGTCACCAGAAGAGGAGGTTTTCACCAGATTGCTCTACAAAACAAATGGAATGAAGTTGTCTCTTTGCTGAAACTGGAAGGCAACAGTGCAATGTTATCTATCCAAGTTGAAAGCCTCTATGCAATACTTCTATACAAATTTGAGAAATTGTACTTCTCTGGCAGCCCCAAAGGAGCTGGATGTCAAGAATCTCGAGTGCTTCTACAAGCACCTTCAAATGACAAAGAAAAGAAGAAACTGCGAGTTGCTCCAACCGGAAAAACTGGATATCAGATATTCCTCAAGAAGGAATGTGCTCGATTAAAAGCTCATGATCCGTACATAGATGGCAAAAAAGTCCTACGGTTGGCTGTTGATGCTTGGCAGAAGATGTCTGTCGCCGAAAAACAGCCATATGTGGAGGAAAGCAAGAAGTTAAAGGAAACAAACAAGGAAGCGATGATCGTTAATGACAATAAACAGAAGAGGCCTAGTGTGTGTGGTGACTCCTACTGTGTAACTTCGCAGCCTCTAACAAATTACTCTGTTATCAACAATGCAGCTGTAAACTTTGAAATGACTGAAGAAACGCTCAAGAATCCCTTCTTGCCAGTTGATTTCGATACTTACTGTTCGATTGTTCGCTAG 825 0.4121 MEGNKTMVPSSPSDTKLTNGKQYSSPDDLEIETFYVKLTQVLDSTGFNLMFNVRETSLDLYLLYLEVTRRGGFHQIALQNKWNEVVSLLKLEGNSAMLSIQVESLYAILLYKFEKLYFSGSPKGAGCQESRVLLQAPSNDKEKKKLRVAPTGKTGYQIFLKKECARLKAHDPYIDGKKVLRLAVDAWQKMSVAEKQPYVEESKKLKETNKEAMIVNDNKQKRPSVCGDSYCVTSQPLTNYSVINNAAVNFEMTEETLKNPFLPVDFDTYCSIVR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03479 274 SMART bright_3 29 119 IPR001606 GO:0003677
Mepo4g03479 274 CDD ARID 32 114 - -
Mepo4g03479 274 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 22 122 - -
Mepo4g03479 274 SMART ARID_2 25 114 - -
Mepo4g03479 274 Gene3D - 14 131 IPR036431 GO:0003677
Mepo4g03479 274 SUPERFAMILY ARID-like 23 121 IPR036431 GO:0003677
Mepo4g03479 274 MobiDBLite consensus disorder prediction 1 24 - -
Mepo4g03479 274 CDD HMG-box_SF 153 207 - -
Mepo4g03479 274 Pfam ARID/BRIGHT DNA binding domain 32 114 IPR001606 GO:0003677
Mepo4g03479 274 ProSiteProfiles ARID domain profile. 28 118 IPR001606 GO:0003677
Mepo4g03479 274 Pfam HMG-box domain 154 213 IPR009071 -
Mepo4g03479 274 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 149 217 IPR009071 -
Mepo4g03479 274 Gene3D High mobility group box domain 140 226 IPR036910 -
Mepo4g03479 274 SUPERFAMILY HMG-box 139 213 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03479 Mepo-Chr4 44166938 44169339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03479 58 150 ARID Transcription Factor Family AT1G76110 29.032 1.89e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mepo4g03479 ARID 3.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03479 - - mtr:120577736 369.777