Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03474 ATGGAACACAATCAACCGGATCTAATAAGGTTGGATATGACGGATAGAATTATCAAGAACCAGATCGCAACTCACCCTCTTTATCCAAATCTACTATCTGCTTTTTTAGAATGCCAAAAGGTTGGGGCACCAACAGAACTTGCGTCTCTTCTTGAAGAAATAGGGCGTGAAAGTCACCAAAATAATGCTTTCCGTGAGATAGGAGATGATCCTGACCTTGACCACTTCATGGAATCATACTGCGAAGTTCTTCATAGATACAAAGAGGAGTTATCCAAGCCCTTCAATGAAGCAACATTGTTTTTGTGTAATATTGAATCACAACTAAACGAGCTTTGCAGGGGGACACAAACAATTTCATCCAATTACAACCGTTCAGATCATGAGGCAGCAGGGACATCAGAGGACGAAATGAGTTGTGGAAAGGTTGAAGCAGTAGAAGGTGTTCATGATGAACTTTGTGGCACATCATGTCCAGGTGACAAAGAGCTTAAAGAAATGCTCCTTCGTAAGTATGGGGGTTACCTTAGCAACTTAAGACAGGAATTTCTCAAGAAAAGGAAAAAAGGTAAACTACCTAAGGATGCAAGAAAAGCATTGATGGATTGGTGGAACGTACACTATAGGTGGCCTTATCCCACGGAGGAGGAGAAACTGCAGCTATCAGATATGACCGGACTTGATATAAAGCAGATAAATAATTGGTTCATCAATCAGAGGAAAAGACATTGGAAACCATCTGAAGATATGAGATTTTCCATTATGGAGGGTGTAAGTAGCACCGGCATAGCAGGACCTCTGTAA 804 0.4117 MEHNQPDLIRLDMTDRIIKNQIATHPLYPNLLSAFLECQKVGAPTELASLLEEIGRESHQNNAFREIGDDPDLDHFMESYCEVLHRYKEELSKPFNEATLFLCNIESQLNELCRGTQTISSNYNRSDHEAAGTSEDEMSCGKVEAVEGVHDELCGTSCPGDKELKEMLLRKYGGYLSNLRQEFLKKRKKGKLPKDARKALMDWWNVHYRWPYPTEEEKLQLSDMTGLDIKQINNWFINQRKRHWKPSEDMRFSIMEGVSSTGIAGPL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03474 267 ProSitePatterns 'Homeobox' domain signature. 221 244 IPR017970 GO:0000981|GO:0006355
Mepo4g03474 267 SMART HOX_1 185 250 IPR001356 GO:0003677
Mepo4g03474 267 Pfam ELK domain 163 184 IPR005539 GO:0003677
Mepo4g03474 267 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 253 - -
Mepo4g03474 267 Pfam Homeobox KN domain 203 242 IPR008422 GO:0003677|GO:0006355
Mepo4g03474 267 SMART KNOX2_2 63 114 IPR005541 GO:0003677|GO:0005634
Mepo4g03474 267 SMART KNOX1_2 16 60 IPR005540 GO:0003677|GO:0005634
Mepo4g03474 267 ProSiteProfiles 'Homeobox' domain profile. 183 246 IPR001356 GO:0003677
Mepo4g03474 267 Gene3D - 181 255 - -
Mepo4g03474 267 SUPERFAMILY Homeodomain-like 185 255 IPR009057 -
Mepo4g03474 267 Pfam KNOX1 domain 18 59 IPR005540 GO:0003677|GO:0005634
Mepo4g03474 267 SMART ELK_2 163 184 IPR005539 GO:0003677
Mepo4g03474 267 CDD homeodomain 195 247 IPR001356 GO:0003677
Mepo4g03474 267 Pfam KNOX2 domain 67 113 IPR005541 GO:0003677|GO:0005634
Mepo4g03474 267 ProSiteProfiles ELK domain profile. 163 183 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03474 Mepo-Chr4 44088060 44095050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03474 17 261 Homeobox Transcription Factor Family AT1G23380 50.787 1.93e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mepo4g03474 KNOX2 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03474 - - mtr:11406488 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03474 4 44088060 44095050 Mepo4g03474 4 44088060 44095050 ECH