Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03454 ATGGGAAGCAGTAGCAGAAAGAAGAAGCAAGTAGAATACGATTTGGAGTTAGAAAAAGTTCGATTAATCAGTTTAGCTCTTGAATCCGGCTTCGACGAACTCTCCGCAAACCAATGTTTCGATCGTCTTGTCTCTCTCTACGGTGACGATGGTCGTGATTTTATCACTGTTGAACACTGCGGCGATGACTTCCTTGCGACATTGGCGGAGTCTGTGCAAGATACGGAGGAATGGGATGATGTACACGAAATGGAATCGCAAGCTGTTGGAACTTTGAATCACGTGCTTGACATGCGCGGTGATGGTTCTAAATGCTTTATTCATATTATTGACGACTCACCCAAGAAAAAACGGAACAAGTTTGTGGAGTTGGGTTCTAGTGACGATGAGGAGGATACTAACTTTAATGTTTCAAGGGTTCAACATCCTACAAACTCAGTGAATGGTAGAAGGGGCATCACTCAGGGCTCGGTTTCATCAACTTCAAGAAAAATAAAATCATCTGCTGCAAAAGACAGAAATAGTACTCTCAGTTATGAAGAATTGAAGGCGCTAGATGATATTGAATTGGCAAATGTTGTTATCTTTGGTAACAAGTCACTTCGACCACTGCAGCATCAAGCATGTAAAGCAGCTTTGGCAAAACAAGATAGTTTTATTCTTATGCCCACTGGTGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACCCTTCAACCCGGAGTTACAGTAGTTGTATCTCCCTTACTTTCACTCATTCAGGATCAGATAATAACACTCAACCTCAAGTTTGGAATACCTGCTACTTTTTTAAATTCTCAACAAAATGCTTCCCAAGCTGCAGCTGTTCTCCAAGAGCTAAGAAAAGACAAGCCTTCGTGCAAGCTTTTGTATGTGACACCTGAGAGAATAGCCGGAAACCAATCATTTATTGGGATTCTAAAATGCATGCATCAGAAGGGTCAACTTGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTAGGATCTCTTAAGCAAAACTTTCCACGTGTTCCTGTCATGGCATTGACCGCCACTGCAACTCACCCAGTCCGCGAGGACATCTTAAATGCTCTAAGAATTCCACATGCAATTGTTCTTGAAAGAAGCTTTGACAGACCGAATTTGAAGTATGAAGTGCTTGTTAAGACAAAGGAACCACTAAAGCAGCTTGGACAGCTACTAATGGATCGTTTCAAGAGTCAGTGTGGCATTGTATACTGCCTTTCAAAAAGTGAATGTGTCGACGTATCGAAATTTTTAAATGAAAAATGTAAAATCAAGGCAGCGTATTACCATGCTGGCTTGGCTGCCCGTCAGAGAGTTGCTGTTCAAAAGAAATGGCACGATGGAGAGGTTCATATTGTATGTGCAACTATTGCTTTTGGAATGGGGATAGACAAAGCTGATGTTCGATTTGTCATCCACAATACAATGTCAAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGACAGTCTTCCTGCAGTTTGCATTGCTCTGTACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAACGGCCAAGGATATAAAAAGGAGAGTTTTAAGACAGCAATGGCTCAAGCCAAAAAGATGCAACAATACTGTGAATTAAAGGATGAATGCCGGAGGCAAACATTACTAGAACACTTTGGAGAATCTTTCGATAAAAAGAACTGCAAATATGGTTCTAGCCCTTGTGATAACTGTCTCAAGACTGCATCATGA 1809 0.414 MGSSSRKKKQVEYDLELEKVRLISLALESGFDELSANQCFDRLVSLYGDDGRDFITVEHCGDDFLATLAESVQDTEEWDDVHEMESQAVGTLNHVLDMRGDGSKCFIHIIDDSPKKKRNKFVELGSSDDEEDTNFNVSRVQHPTNSVNGRRGITQGSVSSTSRKIKSSAAKDRNSTLSYEELKALDDIELANVVIFGNKSLRPLQHQACKAALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQNASQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFIGILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPRVPVMALTATATHPVREDILNALRIPHAIVLERSFDRPNLKYEVLVKTKEPLKQLGQLLMDRFKSQCGIVYCLSKSECVDVSKFLNEKCKIKAAYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKADVRFVIHNTMSKSIESYYQESGRAGRDSLPAVCIALYQKKDFSRVVCMIRNGQGYKKESFKTAMAQAKKMQQYCELKDECRRQTLLEHFGESFDKKNCKYGSSPCDNCLKTAS 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03454 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 538 IPR027417 -
Mepo4g03454 602 CDD SF2_C_RecQ 393 526 - -
Mepo4g03454 602 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 324 333 IPR002464 -
Mepo4g03454 602 SMART helicmild6 435 517 IPR001650 -
Mepo4g03454 602 Pfam DEAD/DEAH box helicase 203 371 IPR011545 GO:0003676|GO:0005524
Mepo4g03454 602 Gene3D - 393 601 IPR027417 -
Mepo4g03454 602 CDD DEXHc_RecQ 195 392 - -
Mepo4g03454 602 SMART ultradead3 197 401 IPR014001 -
Mepo4g03454 602 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 407 560 IPR001650 -
Mepo4g03454 602 NCBIfam RecQ family ATP-dependent DNA helicase 195 600 IPR004589 GO:0004386|GO:0006310
Mepo4g03454 602 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 385 IPR014001 -
Mepo4g03454 602 MobiDBLite consensus disorder prediction 141 165 - -
Mepo4g03454 602 MobiDBLite consensus disorder prediction 141 170 - -
Mepo4g03454 602 FunFam ATP-dependent DNA helicase 182 392 - -
Mepo4g03454 602 Pfam RecQ zinc-binding 529 598 IPR032284 -
Mepo4g03454 602 Pfam Helicase conserved C-terminal domain 410 515 IPR001650 -
Mepo4g03454 602 FunFam ATP-dependent DNA helicase 393 600 - -
Mepo4g03454 602 Gene3D - 158 392 IPR027417 -
Mepo4g03454 602 PANTHER DNA HELICASE RECQ FAMILY MEMBER 186 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03454 Mepo-Chr4 43946417 43952569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03454 360 515 Eukaryotic Initiation Factors Gene Family AT5G11170 26.708 2.14e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03454 K10899 - gmx:100806070 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03454 4 43946417 43952569 Mepo4g03454 4 43946417 43952569 ECH