Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03441 ATGTCAAACAATGACATCGATACAATAAGGTTGAAAAAAGGTGCATGGTCGTTACACGAGGATGCACTATTAAAAGAATATGTGAGAAATTATGGAGAGGGCAATTGGGATGCGGTAAAAGAGAAAACCGAACTTTTTCGATGTGGTAAAAGTTGTCGTCTAAGATGGCTTAATCACTTACATCCTAATTTAAAAAAGGGTTCAATTACTAAAGAAGAAGAACAGAAAATCGTTGAACTTCATGCAAAGATCGGATCCAAATGGTCTCTAATGGTTCAAGAGTTGCCTGGAAGAACTGATAATGAGATAAAGAACTTCTGGAATATAAGAACAAGGAAACGCACAAAACTTGGTTTGCCACTCTACGATCAAATCATAAAACCATTGAATGCCAATGGAGAAAGTACTTTGAGCAACCAGGAGCAAGCTGATGTCTCACAAGTTGACAAATCCGACATATTTGAAGTGAAATCCAAAACAGATATTTTCAGCAGAAAAGATCCTTCAGCTTTGAATGAGATAAATGGAAACAAATTTGAACAAGTTCCAAACTCAAGCCATGCCTCAATTCCTCACCCTGGTGTATCATATATGCTATGCAATAATGTGTCCATTGCTTCTATAAGGAATAATACTTCTCAAACATTAACTAACAGGGGTGGAACTCCTTTTATGATGGTCGCGACGGAATCTGATGTGCCACAATATCAAGGGTGCAACTCCGAATGGTTTAAAATTGCTCAAGAGTTGCCTGGAAGAAGAGGAAATGAGATAGATAACTACCAGAATATAAGAACAAAGAAACGTGCAAAAGCTAGTTTGTCACTTTATGATGTCGAATGGAATGACATTAATGGAGAAACTTGTCTGGATGGTTTGAGCAACCAACATCAAGATCATGTCTCACAAGTACACAAATCCGACATACATGGAAGCAACTTTGAACAACTTTCAAACTCATGTGCTTCTATAAGGAATAATAACACTTCCCCAACATTAAGTAGCAGGGGTGGAACCACTATGGCCATGGAATGTTTAGATTTTCAATCTTCTGAATCTCAACTTCATTCATATTCATTAATTCACAAGTATCCTCTACTTCCACTTCGATCACCCATGGAGATTCCACATCAGTTGTTCGATACACCAACGACAAATGCTAATCAAATGCATTCGTCTGATGAGACAAGACTACACAAGACTGGTTGA 1209 0.3772 MSNNDIDTIRLKKGAWSLHEDALLKEYVRNYGEGNWDAVKEKTELFRCGKSCRLRWLNHLHPNLKKGSITKEEEQKIVELHAKIGSKWSLMVQELPGRTDNEIKNFWNIRTRKRTKLGLPLYDQIIKPLNANGESTLSNQEQADVSQVDKSDIFEVKSKTDIFSRKDPSALNEINGNKFEQVPNSSHASIPHPGVSYMLCNNVSIASIRNNTSQTLTNRGGTPFMMVATESDVPQYQGCNSEWFKIAQELPGRRGNEIDNYQNIRTKKRAKASLSLYDVEWNDINGETCLDGLSNQHQDHVSQVHKSDIHGSNFEQLSNSCASIRNNNTSPTLSSRGGTTMAMECLDFQSSESQLHSYSLIHKYPLLPLRSPMEIPHQLFDTPTTNANQMHSSDETRLHKTG 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03441 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Mepo4g03441 402 SMART sant 65 113 IPR001005 -
Mepo4g03441 402 SMART sant 12 62 IPR001005 -
Mepo4g03441 402 FunFam MYB-related transcription factor 12 65 - -
Mepo4g03441 402 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 242 377 - -
Mepo4g03441 402 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Mepo4g03441 402 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Mepo4g03441 402 Gene3D - 68 132 - -
Mepo4g03441 402 CDD SANT 15 60 IPR001005 -
Mepo4g03441 402 Gene3D - 12 65 - -
Mepo4g03441 402 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Mepo4g03441 402 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Mepo4g03441 402 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Mepo4g03441 402 MobiDBLite consensus disorder prediction 381 402 - -
Mepo4g03441 402 CDD SANT 70 108 IPR001005 -
Mepo4g03441 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03441 Mepo-Chr4 43842912 43845377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03441 242 300 MYB Transcription Factor Family AT2G32460 42.857 1.98e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo4g03441 Myb_DNA-binding 8.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03441 K09422 - han:110940207 187.193