Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03415 ATGGATTCCAACAACAAATCTTTGGAGCAAGTAATTTCAGAAATGGTTGAAATGGGGTTCGAGCATTCCCAAATTCTCGAAGCAATAAAAGTAGTGGGTCCTTCGATTCCAAGCCTTGTGGAGCATATCTTCAATACTAGCAGTAGTAGCAGCAGTAACCGTGAACCATCCACGACCCATGTCACAAAATCACTTCCATGTAATGGGAAAGCTCTAAAAAAACGAACTTTTTCATCTTCCATTGAAGTTCCAAAGTCGAGAACGATCAACCATTATTTTCAGTCCAGTAGTAAAGTCAATGAGAAAAACAAAAATGTGGTTGTTGTTGATGATGATAATGATGATGAGGATGTGGAAGAGCACAAGGAGAAAGTGTCCTTGCCACGAATGGGATTTGATCATGATTCCGGTGTAGCTCATGATTTTGATGTTGCATCTGATTGGGAGCAGAAAGCTAGAATTTTATTGCAAAAGCATTTTGGTTTTTCATCGTTGAAAAGTTTTCAGAAGGAAGCTCTTTCTGCTTGGATTGCTCATAGAGATTGTCTTGTTCTGGCAGCAACTGGATCTGGGAAATCTCTGTGCTTTCATATTCCCGCATTGTTAACTGGGAAAGTGGTGGTTGTGATTTCGCCTCTAATAAGCCTAATGCACGATCAATGCTTAAAGCTAACAAAACATGGAATCAGTGCTTGCTTTCTTGGCTCTGGGCAGCCTGATAATACTGTTGAAAAGAAAGCAATGAGAGGCATGTATAGTATAGTGTATATTTGTCCAGAAACAGTTCTAAGATTGATTCAACCGTTGCAGAAGCTTGCTGAAACCCGTGGTATTGCTTTGTTTGCAATTGATGAGGTACATTGTGTTTCTAAATGGGGTCATGATTTCCGTCCAGCTTACAGCCGACTGTCTGTGTTGAGGGAAAATTTCACTACTGGCAAGCTAAAATCCTTGAAATTTGATATACCTGTAATGGCGTTGACAGCTACAGCTACAAAGAGAGTTCGAGAAGACATTTTAAAATCACTGCTTTTGTCAAAAGATACAAGTGTTGTTCTCACATCATTTTTTCGACCTAATTTACGCTTCATGGTAAAGCATAGTAGAACATCATGGGCTTCTTATGAGAAAGATTTTCATGAATTGATTAAAGTATATGGTGGGAATAAGAAAGCTTTCACCTCAGGTGATGCAGATGGTGTTTCCATTAGCTCTGATGCTTCTGATACAGACAGTGTTTCTTCTGATGATGTGGACGGCAACCAAGATGACTGTGATGATAGGGATATTGATGTAATGCACTCAGGAAACACCGGCAATCATAAAAAAAGAAGAAAACTGACAATTGAGTTCCTGGAAAATGATGTTGATGTCTTTCAAAGTGCAGATGACTTGGATGTTACCTGTGGTGAATTTTGTGTGCAACCTCCTCCCAAGCAATGTGAGTTATCCGAGACAATTGATACACCTACGAAACCAGAAAAAAGACTCAAAATGCTTAAGGAGCCTTTGGGACAAGGACCAACAATTATATATGTACCCACCAGAAAAGATACAGTGAGAATTGCCAAGTATCTCTGCAAGTCTGGTGTGAAGGCTGCCGCTTATAATGCAGGGCTGCCCAAGTTGCATCTAAGAAGGACTCATAAAGAGTTTCATGAAAATACTTTAGAGGTTGTTGTTGCAACAATAGCGTTTGGAATGGGAATTGATAAATCGAATGTTAGAAGAATCATCCACTATGGTTGGCCGCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCTGATTGCATTCTATATGCAAACCTAGCAAGGAAGCCATCACTTTTGCCAAGTCGTAGAAGTGAAGATATGACAAAACAAGCATATATCATGTTGTCCGATTGTTTCAGATATGGAATGAATACTTCATGCTGTCGAGCAAAGATACTTGTAGAATACTTCGGAGAGGATTTCAGCCATCAGAAGTGTCTCTTATGTGATGTGTGCAATAATGGACCACCTCAAAGACTGAATCTAAAAGAGGAGGCTTGTATTTTACTGCAAACTATAATGCAGGCCGGAAATGCACGTAGCTATTCCATGGATTCCTCATATAATGATGATATCCATTTCGATTCCAAGGATAGAAGACTAGGAGAGAGGCCAAGTCTTATGACGTTAGTTAGAAGTATAAGGGAGCAGTTTCAAAAATTCTTAACCACTGATATACTGTGGTGGAGAGGCCTTACTCGAATTTTGGAAGCTAAAGGATATATCAGGGAAGGAGATGACAAGACGAACGTTCAGATAAAATATCCGGAACTAACAGAACTAGGTATGGAATTTGTGAAGTCCATGACTGAAGAAACTTTCTATGTTTACCCTGAGGCAGATATGTTACTTGAAACAAAAACTGACAAACCGTTTTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGTCTAGAAAGAATGCAACTCGATAGAAGTCCAACGAAGCGGCAGAGCCCCAGAAAACAAAGAAAGAAGAGAGCTAGAAAAACGAAACCTGATTTGAGGACTTCTCGGGGTAGACTATCAGCAAAACTCTCAAAAAAGTAA 2631 0.4021 MDSNNKSLEQVISEMVEMGFEHSQILEAIKVVGPSIPSLVEHIFNTSSSSSSNREPSTTHVTKSLPCNGKALKKRTFSSSIEVPKSRTINHYFQSSSKVNEKNKNVVVVDDDNDDEDVEEHKEKVSLPRMGFDHDSGVAHDFDVASDWEQKARILLQKHFGFSSLKSFQKEALSAWIAHRDCLVLAATGSGKSLCFHIPALLTGKVVVVISPLISLMHDQCLKLTKHGISACFLGSGQPDNTVEKKAMRGMYSIVYICPETVLRLIQPLQKLAETRGIALFAIDEVHCVSKWGHDFRPAYSRLSVLRENFTTGKLKSLKFDIPVMALTATATKRVREDILKSLLLSKDTSVVLTSFFRPNLRFMVKHSRTSWASYEKDFHELIKVYGGNKKAFTSGDADGVSISSDASDTDSVSSDDVDGNQDDCDDRDIDVMHSGNTGNHKKRRKLTIEFLENDVDVFQSADDLDVTCGEFCVQPPPKQCELSETIDTPTKPEKRLKMLKEPLGQGPTIIYVPTRKDTVRIAKYLCKSGVKAAAYNAGLPKLHLRRTHKEFHENTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLARKPSLLPSRRSEDMTKQAYIMLSDCFRYGMNTSCCRAKILVEYFGEDFSHQKCLLCDVCNNGPPQRLNLKEEACILLQTIMQAGNARSYSMDSSYNDDIHFDSKDRRLGERPSLMTLVRSIREQFQKFLTTDILWWRGLTRILEAKGYIREGDDKTNVQIKYPELTELGMEFVKSMTEETFYVYPEADMLLETKTDKPFSSFSEWGKGWADPEIRRQRLERMQLDRSPTKRQSPRKQRKKRARKTKPDLRTSRGRLSAKLSKK 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03415 876 MobiDBLite consensus disorder prediction 845 861 - -
Mepo4g03415 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 290 IPR027417 -
Mepo4g03415 876 FunFam ATP-dependent DNA helicase 135 357 - -
Mepo4g03415 876 SMART helicmild6 520 601 IPR001650 -
Mepo4g03415 876 MobiDBLite consensus disorder prediction 403 439 - -
Mepo4g03415 876 FunFam ATP-dependent DNA helicase 483 610 - -
Mepo4g03415 876 Pfam Helicase conserved C-terminal domain 492 600 IPR001650 -
Mepo4g03415 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 349 IPR014001 -
Mepo4g03415 876 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 492 654 IPR001650 -
Mepo4g03415 876 MobiDBLite consensus disorder prediction 412 426 - -
Mepo4g03415 876 SMART ultradead3 161 366 IPR014001 -
Mepo4g03415 876 MobiDBLite consensus disorder prediction 830 876 - -
Mepo4g03415 876 MobiDBLite consensus disorder prediction 830 844 - -
Mepo4g03415 876 Gene3D - 131 357 IPR027417 -
Mepo4g03415 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 611 IPR027417 -
Mepo4g03415 876 Pfam DEAD/DEAH box helicase 168 336 IPR011545 GO:0003676|GO:0005524
Mepo4g03415 876 Gene3D - 613 798 IPR036388 -
Mepo4g03415 876 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 46 IPR015940 -
Mepo4g03415 876 Pfam RecQ zinc-binding 624 672 IPR032284 -
Mepo4g03415 876 Gene3D - 483 610 IPR027417 -
Mepo4g03415 876 PANTHER DNA HELICASE RECQ FAMILY MEMBER 145 855 - -
Mepo4g03415 876 NCBIfam RecQ family ATP-dependent DNA helicase 155 383 IPR004589 GO:0004386|GO:0006310
Mepo4g03415 876 CDD DEXHc_RecQ 156 356 - -
Mepo4g03415 876 FunFam ATP-dependent DNA helicase 612 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03415 Mepo-Chr4 43622358 43628996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03415 495 619 Eukaryotic Initiation Factors Gene Family AT5G11170 26.400 1.84e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03415 K10900 - gmx:100793222 1199.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03415 4 43622358 43628996 Mepo4g03415 4 43622358 43628996 ECH