Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03409 ATGGCCGCCGGAGCAACCGTAAACGCGAATGAAACCACTCGTGAGCATACAGAACAAGAAGTAGACGAGGACCAAAGCTTTGAAGAGCTAGGTTTAGACGCACGTCTCGTTCGCGCTTTACTGAAGAAACGAATTGAGAAACCTACTCCAATTCAACACGTTGCGATTCCATTGATTCTCGAAGGTAAAGACGTGGTTGCTCGTGCAAAAACCGGTTCTGGCAAAACACTTGCTTATCTTCTTCCATTGCTTCATAAACTGTTTACTGCTAATGTTGATAGAAAGAAGCTAGCTCCTAATGTTTTTGTTCTCGCGCCGAGTCGTGAACTATGCCAACAGATATATGTGGAAGTGAAGTCACTCCTTGAGCTATGCAAAGTTCCACTGAAAGTTGTGCAGTTGAATAGCAATATGCTTGCTGCTGACTTGCAAGCAGCATTGGTTGGGCCTCCCGATGTTTTAATCTCCACTCCTGCTTGCATAGCCAAGTGTCTGTCTAACTCGGTACTTCAGGCAGCATCAATTAATGGTTCTCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGACATAAAAGCTTTAACACCTCACATACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGACGATGTTGACAAACTAAAAAAGTTGATTTTACACAACCCCGTTATCTTGACTCTGCCTGAAGTGGGAAACCGTAAGGATGAGGTCATCCCTAAAAATGTTCAGCAGTTCTGGATCTCCTGTCCTGCCAATGATAAGTTGCTCTACATCCTTGCTATGTTGAAGTTGGAGTTAGTCCAAAAGAAAGTTCTGATATTCACTAATAACATAGATACGAGTTTCAGATTGAAACTATTCTTGGAGAAGTTTGGGATCAAGTCGGCTGTTTTAAATGCTGAATTGCCGCAGAATTCCCGTCTCCATATTCTTGAGGAATTCAATGCCGGCCTATTTGATTATCTAATTGCGACAGATATCAGCCAGTCAGCGGAGAAGGATGAAGCACCTAAGGAAAATATTGTTGGATCAAAAAAGTCTAAAAAATATACAAAGCTAAAATTAGATTCGGAATTCGGAGTAGTTAGGGGAATTGACTTCAAAAATGTATACACGGTTATAAACTTTGAAATGCCCCGCAGTGTGACAGGATACGTACATCGAATTGGACGTACTGGAAGAGCATACAGTTCTGGTACTTCTATCTCCTTGGTTTCTACAGATGAGATGGATACCTTTGAAGAAGTAAGATCTTTTGTTGGGGACAATGAAAACAACGGCTCAAACTCAATTGCAGAGTTTCCCTTACTCACCAAGAGTGCAGTTGAATCTTTACGGTATAGGGCTGAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTCCGAGAATCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGCAAAGCTGACGGCTCACTTTCAAACTAATCCAAGAGACTTAGATCTATTGAAACATGACAAAGTTTTGAGCAAAACTGCTCCTCCTCCACACCTTCGCGATGTTCCAGATTACCTAATAGACAAAACAACAAAAGAGGCAAGGGCAATGGTTAAGCTTACCAGAGATGCAATGGGAAATAATAATCACCGACGGGGATCCAAGAGAAAATCAAGGAAAGGCGGTGACCCTCTGATGGCCATCTCCGCTGGGGTATCAAAAAAACCGCACAAAGGTTTTAAAAAGGACGGTGCAAGCAATGGTGATAGACAAAAACACAAAAAGACAAAGGCAATTTGA 1803 0.4171 MAAGATVNANETTREHTEQEVDEDQSFEELGLDARLVRALLKKRIEKPTPIQHVAIPLILEGKDVVARAKTGSGKTLAYLLPLLHKLFTANVDRKKLAPNVFVLAPSRELCQQIYVEVKSLLELCKVPLKVVQLNSNMLAADLQAALVGPPDVLISTPACIAKCLSNSVLQAASINGSLETLVLDEADLLLSYGYENDIKALTPHIPRSCQCLLMSATSSDDVDKLKKLILHNPVILTLPEVGNRKDEVIPKNVQQFWISCPANDKLLYILAMLKLELVQKKVLIFTNNIDTSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDISQSAEKDEAPKENIVGSKKSKKYTKLKLDSEFGVVRGIDFKNVYTVINFEMPRSVTGYVHRIGRTGRAYSSGTSISLVSTDEMDTFEEVRSFVGDNENNGSNSIAEFPLLTKSAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSAKLTAHFQTNPRDLDLLKHDKVLSKTAPPPHLRDVPDYLIDKTTKEARAMVKLTRDAMGNNNHRRGSKRKSRKGGDPLMAISAGVSKKPHKGFKKDGASNGDRQKHKKTKAI 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03409 600 Gene3D - 3 240 IPR027417 -
Mepo4g03409 600 PANTHER RNA HELICASE 15 532 - -
Mepo4g03409 600 MobiDBLite consensus disorder prediction 577 594 - -
Mepo4g03409 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 432 IPR027417 -
Mepo4g03409 600 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 273 454 IPR001650 -
Mepo4g03409 600 Pfam Helicase conserved C-terminal domain 265 408 IPR001650 -
Mepo4g03409 600 CDD DEADc_DDX56 32 239 - -
Mepo4g03409 600 Gene3D - 242 447 IPR027417 -
Mepo4g03409 600 SMART helicmild6 294 408 IPR001650 -
Mepo4g03409 600 Pfam DEAD/DEAH box helicase 49 226 IPR011545 GO:0003676|GO:0005524
Mepo4g03409 600 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 237 IPR014001 -
Mepo4g03409 600 SMART ultradead3 44 257 IPR014001 -
Mepo4g03409 600 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 53 IPR014014 GO:0003724
Mepo4g03409 600 MobiDBLite consensus disorder prediction 543 600 - -
Mepo4g03409 600 MobiDBLite consensus disorder prediction 1 25 - -
Mepo4g03409 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 238 IPR027417 -
Mepo4g03409 600 CDD SF2_C_DEAD 254 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03409 Mepo-Chr4 43579694 43587128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03409 22 421 Eukaryotic Initiation Factors Gene Family AT3G13920 27.543 7.44e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03409 K14810 - gmx:100800749 950.658