Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03406 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTACAGAGAATACAAGAGAAGATGCAGTTAAACAGCAACAAACTGATCAAATACTTGGTCAATTTCATAGTCCACATTCTCATACTTCAACAACAACAAATAATAATAATAATAGCAATTGTTCTAACACAGATTTACAACCACCTCTTAAGAAGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCACTATCACCAACAACACTAATGGCTACAAACAGATTCGTATGTGAAATATGTAACAAGGGTTTTCAAAGAGACCAAAATCTTCAACTGCACCGAAGAGGACACAACTTACCTTGGAAGCTTAAACAAAGAACTAGTGCAGAAATTAGAAAGAGGGTTTATGTTTGTCCTGAACCTTCATGTGTTCACCATAACCCTGCAAGAGCACTTGGTGATCTTACTGGTATTAAAAAGCACTTTTGTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAATATGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGACAGCTTCATTACCCACAGAGCATTCTGTGACGCATTAGCTGAAGAGAACAACAAAGCCAACGAAGGTGTAGTTTCAAACTTGCAACACCAACCAATCTCAAATCTCGTTTCCTCATTACCTTTAAACCCCATTAATAACCCTCAAATTGGTGGAACTGCATCAGAATTCAACAACCATTCAGATCACAAGCTCCCATTATCATCACCTCATGAACTCATGTCAGTGCCACCAAAACCCTTCAGCAACAACATATTCACTAGAAGCCTTTCATCATCAACTTCATCTCCTTCTCTTCAACTTAGTTCAAATAATTCACTCAACAACATCTTGGAAGAAAATGGTTCACTCCATTTATCTGCTGCTACCTCACCTCACATGTCAGCCACTGCATTGCTACAAAAAGCTGCTCAAATGGGTGCAACTGTGAGTAATAATAATGCAGGTATCATGACGGATAAAACTACTGTTACTACGAACATGATGGCGCCGCCGCAGTTTGGTGTGGTGCAACAACAAGGACATGCTTTCATGAACCACTACATGCAACAGCAACATCAACACTACAATAATAATTTCAATGCAAATGGGATAATAAATGGAGGTATTGGAATGAATGGAGTTGATATGTTTAATGCTATATTGGATCAAAGTAAGGCTTTATCGAAGATCATTGAACAAAACAATCAAACTCAAAGCATTAATAGTGTTGTTGGAGGTGGAGGAGGAGGTGCATCAAGTAATAGTAATAATGTTATGAACATTAGTGGAAGTAAGGGTGGTGGGGATGTAATGACACTGGATTTGTTGGGGATAGGAGGAGGAGGTGCACATAGTAATTTCTATGGAGGGGGTACACAACAACAACAGGCAGAAAGTGCAGCTGCAGCAGCAGCAGCAGATGAGGTTTGGAGAAATTGGTCAACCAAGAATGGAGGGTTTGAATCTTTTTCAGCAACAAGCAACATTTGA 1590 0.3918 MSNITSCDSGSFSTENTREDAVKQQQTDQILGQFHSPHSHTSTTTNNNNNSNCSNTDLQPPLKKKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSAEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGVVSNLQHQPISNLVSSLPLNPINNPQIGGTASEFNNHSDHKLPLSSPHELMSVPPKPFSNNIFTRSLSSSTSSPSLQLSSNNSLNNILEENGSLHLSAATSPHMSATALLQKAAQMGATVSNNNAGIMTDKTTVTTNMMAPPQFGVVQQQGHAFMNHYMQQQHQHYNNNFNANGIINGGIGMNGVDMFNAILDQSKALSKIIEQNNQTQSINSVVGGGGGGASSNSNNVMNISGSKGGGDVMTLDLLGIGGGGAHSNFYGGGTQQQQAESAAAAAAADEVWRNWSTKNGGFESFSATSNI 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03406 529 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Mepo4g03406 529 Gene3D Classic Zinc Finger 147 226 - -
Mepo4g03406 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Mepo4g03406 529 Pfam Zinc finger, C2H2 type 92 114 IPR013087 -
Mepo4g03406 529 MobiDBLite consensus disorder prediction 1 61 - -
Mepo4g03406 529 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Mepo4g03406 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 494 IPR031140 -
Mepo4g03406 529 MobiDBLite consensus disorder prediction 1 76 - -
Mepo4g03406 529 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Mepo4g03406 529 FunFam protein indeterminate-domain 12-like 71 139 - -
Mepo4g03406 529 Gene3D Classic Zinc Finger 71 137 - -
Mepo4g03406 529 SMART c2h2final6 168 188 IPR013087 -
Mepo4g03406 529 SMART c2h2final6 133 163 IPR013087 -
Mepo4g03406 529 SMART c2h2final6 92 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03406 Mepo-Chr4 43563696 43567976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03406 42 350 IDZ Gene Family AT3G50700 56.765 1.28e-119 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g03406 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03406 - - gmx:100813556 669.848