Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03405 ATGAACGATGAGGGCGATAAAACGTTGCTCATAGCTAATGTGGGTAGAATAATGAAGCAAAATCTTCCTCCCAATGCAAAGATCTCAAAAGAAAGCAAACAGTTGATGCAAGAATGTGCGACAGAGTTCATAAGTTTCGTGACAGGTGAAGCATCTGACAAGTGTCACAAGGAGAATCGCAAAACCGTTAATGGGGATGACATCTGTTGGGCTCTGTGTTCGTTAGGGTTTGATAACTATGCTGAAGCCATTGGAAGGTACTTGTATAAATTCAGACAAGCTGAACTTGTTAGAATAAATCAGAACAAACTTCATGAGACTGCAAAAGAAAAGTTTGAAGAAGATGCAACAAATCCAAGTACCAAACATAGTAGTCATCTGTAA 384 0.3906 MNDEGDKTLLIANVGRIMKQNLPPNAKISKESKQLMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALCSLGFDNYAEAIGRYLYKFRQAELVRINQNKLHETAKEKFEEDATNPSTKHSSHL 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03405 127 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mepo4g03405 127 Gene3D Histone, subunit A 1 126 IPR009072 GO:0046982
Mepo4g03405 127 SUPERFAMILY Histone-fold 6 114 IPR009072 GO:0046982
Mepo4g03405 127 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Mepo4g03405 127 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Mepo4g03405 127 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Mepo4g03405 127 ProSitePatterns NF-YB/HAP3 subunit signature. 39 55 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mepo4g03405 127 MobiDBLite consensus disorder prediction 108 127 - -
Mepo4g03405 127 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 72 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03405 Mepo-Chr4 43543961 43544344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03405 1 122 CCAAT-HAP3 Transcription Factor Family AT1G09030 64.286 4.72e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mepo4g03405 CBFD_NFYB_HMF 7.3e-24 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03405 K08065 - gmx:100815151 174.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03405 4 43543961 43544344 Mepo4g03405 4 43543961 43544344 ECH