Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03376 ATGGATAACTCACATCAAAATGACAAATCTATCCTTATGTGTTTTTTCTTCATCTTCCTCTTTTTCTCCGGCGTCCCCTTCGCCGGAGCACAAACCAACGACAACACAAATGATAACTCATATTACAACCGTGTAAGCCCTTCCATGGCTATAATAATCGTAATTCTCATCGCTGCTCTTTTTCTCATGGGTTTCTTCTCAATCTACATCCGTCGATGCGGCGATTCACCTTCCAACAGCATCCGCAACATGGCAGGAGGTCTAGCTGGACGTTCACGACGCGCGGCGCGTGGTCTTGACGCTTCGGTGATTGCAACGTTCCCGATCTTTGAATACTCGGCTGTTAAGATTCATAAAATCGGAAAAGGCGCGTTGGAATGTGCTGTTTGTTTGAACGAGTTTGAAGAGAGTGAAACGCTGCGTTTGATTCCAAAGTGTGATCATGTTTTTCACCCTGAGTGTATTGATGAATGGCTCGGTTCACATACCACTTGTCCGGTTTGCAGAGCTAATTTGGTTCCTCAACCGGGTGAATCGGTTCACGGTATCCCGTCGATTAATACCGAACCACAAGATATTGAAGCTCAAAACGACGCTGTTGAATCGGTTCATGAACGTCAAAACGCGGACGGTTCTGTAAAAGTCGAGCCAACCGAACCAGAAGTGTTGACTGTAAGCCAGACGCTGAACCGCAACCGTACGAGAGGTTCACAGTCTGGTCGGCCACGTTGGTTTCAACGGTCTCATTCCACCGGTCATTCATTGGTTCAACCGGGTGAGAATACTGAACGGTTCACTTTGAGGCTACCGGTTGAAGTGAGGAAACAAATACTACAGAACCCGGAACTGCATAGAGCTAGAAGCTTGGTTGTGTTGCCAAGAGAAACTAGCTCACGACGAGGTTATCGAACCGGTGGTGGTGAAGGAAGTAGTAGAGGGAAGTCTGTAAGGCGGTTGGACCGGGGTTTATTATCAGACCGGTGGGTTTTTACTATGGCCCCACCTTTCCTTGTAAGAGCATCTTCGATTAGGTCACCGAGGGTGGCTAGTAGCTCCGGTGAAGGTACATCTGCTTCAGCAGCTACGGCAACGGTTGTTGACTCGCCACGGCCACCGGTTTAA 1122 0.4831 MDNSHQNDKSILMCFFFIFLFFSGVPFAGAQTNDNTNDNSYYNRVSPSMAIIIVILIAALFLMGFFSIYIRRCGDSPSNSIRNMAGGLAGRSRRAARGLDASVIATFPIFEYSAVKIHKIGKGALECAVCLNEFEESETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVHGIPSINTEPQDIEAQNDAVESVHERQNADGSVKVEPTEPEVLTVSQTLNRNRTRGSQSGRPRWFQRSHSTGHSLVQPGENTERFTLRLPVEVRKQILQNPELHRARSLVVLPRETSSRRGYRTGGGEGSSRGKSVRRLDRGLLSDRWVFTMAPPFLVRASSIRSPRVASSSGEGTSASAATATVVDSPRPPV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03376 373 CDD RING-H2_EL5-like 126 169 - -
Mepo4g03376 373 PANTHER RING FINGER DOMAIN-CONTAINING 35 175 - -
Mepo4g03376 373 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Mepo4g03376 373 SMART ring_2 127 168 IPR001841 -
Mepo4g03376 373 FunFam E3 ubiquitin-protein ligase ATL6 88 175 - -
Mepo4g03376 373 Pfam Ring finger domain 126 169 IPR001841 -
Mepo4g03376 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 174 IPR013083 -
Mepo4g03376 373 MobiDBLite consensus disorder prediction 225 258 - -
Mepo4g03376 373 MobiDBLite consensus disorder prediction 296 315 - -
Mepo4g03376 373 MobiDBLite consensus disorder prediction 344 364 - -
Mepo4g03376 373 MobiDBLite consensus disorder prediction 342 373 - -
Mepo4g03376 373 SUPERFAMILY RING/U-box 121 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03376 Mepo-Chr4 43291300 43292689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03376 3 370 Rapid Response to Elicitors AT3G05200 45.699 1.89e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03376 K10664 - gmx:100810865 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03376 4 43291300 43292689 Mepo4g03376 4 43291300 43292689 ECH