Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03374 ATGTGTTTACCTGAAGAGGAAAGAGATAGAGTGAAAGACATGGCACTAGAAGCAGTGGTTTATCCACAAACACAAGATCCTTTTAGTTATGGAATCAAAGATTTTTACAACTTCAACTTCAACACTCTTGTTGCAAAAGAACAAGAACAAGAACAAAGATCTTTCAGTTTTGTAGAAAACCAAACAGAGAATAATTGTCCTTATGTAGATTGGAATAACAATAGTTCCACTTTTTCACCACCCCATTTGAATGAAGTTCAAGAAACCACTACTGATCCAAGTAGTAATACTAATAACACTCAAAACTTTCATGCTTCACCTTCTGTGAACACAGTTATTCGTCCGAAAAGGCGCAGAGCTAGAAGCAGAAAAAACAAAGAAGAAATTGAGAATCAGAGAATGACTCACATTGCTGTTGAGCGTAATAGAAGAAAGCAGATGAATGAGTATCTTTCTATTCTTCGCTCTCTAATGCCATATTCTTACATCCAAAGGGGTGACCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTGAAAGAGCTTGAGCACAAGTTTCATTTTCTTGGTGCTAAGAAAGAAAGAGAGGTGAAATCTGATGATGCTGGTGGATCAAACAACATGCCATTTTCTGAGTTCTTTTCATTTCCACAGTATTCAACAAGTGGTAGTGTGTGTGATAATTCTAATTCTGCAGCTACTGTTGGTGAAAAAGTTGGTGAGATTCAATCTTGCATTGCTGACATAGAAGTGACAATGGTGGAAAACCATGCAAATCTTAAAATAAGATCAAGAAAGAGGCCAAAGCAGCTCTTGAAAATGGTATCTGGTTTGCAAAACATGCACCTCACAATCTTGCATTTAAATGTTACTACTACTGATGAAATTGTTCTTTACTCTCTCAGTGTTAAGGTTGAAGATGATTGCAAGTTGGGATCAGTGGATGATATAGCTTCAGCTGTATACCAGATGGTCACTAGGATTCAACAAGAGGCAATGTTGAATTAA 1008 0.3671 MCLPEEERDRVKDMALEAVVYPQTQDPFSYGIKDFYNFNFNTLVAKEQEQEQRSFSFVENQTENNCPYVDWNNNSSTFSPPHLNEVQETTTDPSSNTNNTQNFHASPSVNTVIRPKRRRARSRKNKEEIENQRMTHIAVERNRRKQMNEYLSILRSLMPYSYIQRGDQASIIGGAINFVKELEHKFHFLGAKKEREVKSDDAGGSNNMPFSEFFSFPQYSTSGSVCDNSNSAATVGEKVGEIQSCIADIEVTMVENHANLKIRSRKRPKQLLKMVSGLQNMHLTILHLNVTTTDEIVLYSLSVKVEDDCKLGSVDDIASAVYQMVTRIQQEAMLN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03374 335 Pfam Helix-loop-helix DNA-binding domain 132 183 IPR011598 GO:0046983
Mepo4g03374 335 PANTHER MAX DIMERIZATION, MAD 64 332 - -
Mepo4g03374 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 195 IPR036638 GO:0046983
Mepo4g03374 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 182 IPR011598 GO:0046983
Mepo4g03374 335 MobiDBLite consensus disorder prediction 77 106 - -
Mepo4g03374 335 Gene3D - 116 188 IPR036638 GO:0046983
Mepo4g03374 335 SMART finulus 137 188 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03374 Mepo-Chr4 43257360 43259125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03374 14 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.742 3.45e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo4g03374 HLH 8.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03374 - - pvu:PHAVU_007G181900g 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03374 4 43257360 43259125 Mepo4g03374 4 43257360 43259125 ECH
Mepo3g04017 3 49524950 49526340 Mepo4g03374 4 43257360 43259125 PCT