Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03269 ATGGAGGGAATACCTGGGGATGAAGTGGTAAATGTTGAGAGTGCTTCTGGTGGTTCTGCAAATGACGACTCAGACGATGAGGGATCTTCGCCTTCTGAAATTGATGACAAATTGCATCTTGAGGAACCTCTAACGGAGGCGGAAATAGAAGACCTTATTTCTGAGCTGTTAGAAGTGGAGAGTAAGGCTGCGGAGGCCCAAGAAACTCTTGAAGAAGAGTCTCTTGCCAAAGTAGAAAGTGAAGTTAGACAAGAATTGGAGCAAACTCTACAGGGGGATGATCTGGAAACTGCTGTTGCTGATGAGATGGCTGCTTTTAAAGAAGAGTGGGAAGCTGCTCTGGATGACCTTGAAACTGAAAGTTCCCACTTACTGGAACAACTTGACGGGGCTGGAATTGAGCTACCAAGCCTTTATAAGTTGATTGAAAGAGAAGCTCCAGATCATTGTTGCACTGAAGCATGGAAAAAGCGGAATCATTGGGTTGGGTCTCAGGCAACTACTGAAATTGCTTCGTCAGTTTCTGATGCTGAAAAGTATCTACAAATAAACAGACCTGTTAGAAGGCGACACGGCAAATTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAAATTTCTCCTGAAACCCTGGAACCTGGAAAAAAAGAAACTGAGGGGGACTGGGATGTGTTCAATAAAATAATTTCTGATGAGAGTGGTATTGATGCCTCATTTGGCAGTAAGACTTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCGAATTTCCTGGAGTCAACGAGGTGGAAGAAATTGATGATATTGATGGCAATTCTACCGATCCATTTGTTGCAGCAGCCATTGCTAATGAAAAAGAATTAGATCTTTCTGAGGAGCAAAGAAGACAATTTAAAAAGGTCAAAGAAGAGGATGATGCAATTGTTGATAGGAAGCTTCAAGTACGTTTGAAACACAGGAGGCATCGAAAAAAAAGTAAACAGCGAGAAACAAGTACACCTATCCTGTCGATGGAGAGCCATGTACAGAAGTCTTCATCTGTTGATCAATTTAACCCTGATACAAAGGAAGGAACTAGCGATGAAGGGGAAATTCTGTCTGACAATAACAAGGCTGCAGGTTTGAATATGGAGGCCACTAAAATTATAGGTTTTGATGCCAATTTTCATCTTGACAAAGAAAAGCCTATGGGAGATGGTAATTTGCAAGATCCTCCCAAATCTCCACTGGGTGATGATATTGAACAGAGAGGAACCAAGCGTCTAAATGACGGTGAGCTTGATGCTGATAAAAAGAAGGGCCGGGCTGATATCATCAACAGTGACGATGATATACCTGTTTCCAGTTCTGGTAGTAGTGATTCAGATGATTCAGACGACTCAGACGATTCAGACGATTCAGATGATTCAGAGATAAATGTTTCAATAAGCACCAAACGAAGACGCAAAAAGAAGATTAGGAGGATACTTGATGACACTGAATTGGGAGAAGAAACAAAAAAGAAAATAGCAATTGAAAAGGAACGTCAAGAACGCCTGAAGTCTTTGAGAGTACAGTTTTCTGCTTCATCGTTCGACACTAGCTCTGCTGGCTGTAATGGGAGTTCATCCGAAGGTGCAAGCGTTGAAATTCTTGGTGATGCACTGGCAGGTTATATAGTGAATGTTGTGAGAGAAAAAGGTGAAGAAGCGGTTAGAATACCTCCGAGCATTTCAGCAAAGCTGAAGGTCCATCAGATTGCCGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTTAAGTCTGGAGATAAAGGTCTAGGGTGTATTCTTGCGCATACCATGGGCCTGGGTAAAACATTTCAGGTAATAGCTTTCTTGTATACGGCAATGAGAAGTGTTGATTTGGGTTTAAGAACTGCACTTATTGTCACACCTGTAAATGTGCTACATAATTGGAGGACAGAGTTCATCAAATGGGCACCATCAGAATTAAAGCGACTAAAGGTCTTCATGCTGGAAGATGTATCAAGAGATAGGAGGGCACAATTACTTGCCAAATGGAGAGCGAAAGGTGGTGTATTGTTAATCGGCTATGCCGCTTTCCGGAATTTGTCTTTTGGAAAGCACGTGAAAGACCGGGAGATGGCCAGAGAACTTTGCCATGCTTTGCAGGATGGCCCTGACATTCTTGTGTGTGATGAAGCCCATATCATTAAAAATACTAAGGCTGACGTTACTCATGCCTTGAAACAAGTAAAGTGCCAGAGAAGAATTGCACTTACAGGATCACCTCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGTCATGAGTTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGTCAACACACTAATTCCACTCAGACTGATGTAAAAATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAAGGCTTTGTCCAAAGAATGGACATGAATGTTGTGAAGAAAGACCTACCGCCCAAAACTGTTTTCGTGATAACAGTCAAGCTTTCTCCCCTACAAAGAAAATTGTACAAGAGATTCATTGACGTGCATGGGTTCTCTAATGTTAAGGAAAATCAGGAAAATTTAAGAAAGAGGAGCTTTTTTGCTGGGTATCAGGCATTGGCTCGGATATGGAACCACCCTGGGATTTTGCAAATGGCAAAAGAAGACAAGGAATGTGTAAGACCTGAAGATGCTGTTGAGAATTTACTTGTTGATGATATCTCAAGTGAAGAAAATTCTGATTCTAATGTGCTTGCTGGAGAGAAGTTGAAGTATACAAATGATTTGCCGCCAAGGAAGGATGGTAATGGATTTTTCGTAAAGGGCTGGTGGAAAGATATTCTTCAGGGCAAAATTTTTAAAGAGCTTGATCAAAGTGGCAAAATGGTTTTACTAATTGATATACTCACCATGAGTTCTGACGTTGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATAGAACTATATCTCTCAAAGCTACCACGAAGTGGAAAGCGAGGGAAGCTGTGGAAGAAGGGAAGAGATTGGTATAGACTGGATGGAAGGACAGAGAGCTCCGAAAGGCAGAAGCTTGTTGAGAGATTTAACGAGCCTCTGAATAAAAGGGTTAAATGCACTCTTATTTCAACTCGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAACCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTTCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGAAAAAGCCCGTGTTTGCTTATCGGTTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTTACGAAAGAGGGGCTTGCTGCTAGAGTGGTCGATAGACAACAGGTGCATAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGACTTTGGTGATGACGAGAATCCTGAGACTTTGGCTGAACTAAGTGAACAAAGTAATCCAATTTTGGCTGGGGATTCACTGAAACATACAGTACCACATTCAAATGGAAGCAGTTATTCTGATAAGTTAATGGAAAGCTTACTAGGCAAGCATCATCCCCGGTGGATTGCCAATTATCATTTACATGAATCCCTGTTACAAGAAAACGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTGTATCGCAAATCGCTGGAATGGGAAGAAGTTCAAAGAGTACCGATTGGTGAGTCTGTGCCTGATCCAAAGCCAGAGGTGTCAAAGGCAGAAGAAGAACAACCTGAAGTAGAAACTTGGCAGCTTTCAACTAAGCTGAGAAATCGTTTCACAAAGCGGCAATGCACCAACCTTGCACATTTGCTGACACTTAGAAGCCAAAGAATAAAAATTGGGGGCTATACAGTCTGTGGGGAATGTGCCCGGGTGGTAAGGTGGGAAGACTTGAAGAAATAA 4020 0.4179 MEGIPGDEVVNVESASGGSANDDSDDEGSSPSEIDDKLHLEEPLTEAEIEDLISELLEVESKAAEAQETLEEESLAKVESEVRQELEQTLQGDDLETAVADEMAAFKEEWEAALDDLETESSHLLEQLDGAGIELPSLYKLIEREAPDHCCTEAWKKRNHWVGSQATTEIASSVSDAEKYLQINRPVRRRHGKLLEEGASGFLQKKISPETLEPGKKETEGDWDVFNKIISDESGIDASFGSKTWASVYLASTPQQAALMGLEFPGVNEVEEIDDIDGNSTDPFVAAAIANEKELDLSEEQRRQFKKVKEEDDAIVDRKLQVRLKHRRHRKKSKQRETSTPILSMESHVQKSSSVDQFNPDTKEGTSDEGEILSDNNKAAGLNMEATKIIGFDANFHLDKEKPMGDGNLQDPPKSPLGDDIEQRGTKRLNDGELDADKKKGRADIINSDDDIPVSSSGSSDSDDSDDSDDSDDSDDSEINVSISTKRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRVQFSASSFDTSSAGCNGSSSEGASVEILGDALAGYIVNVVREKGEEAVRIPPSISAKLKVHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRTEFIKWAPSELKRLKVFMLEDVSRDRRAQLLAKWRAKGGVLLIGYAAFRNLSFGKHVKDREMARELCHALQDGPDILVCDEAHIIKNTKADVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTQTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFIDVHGFSNVKENQENLRKRSFFAGYQALARIWNHPGILQMAKEDKECVRPEDAVENLLVDDISSEENSDSNVLAGEKLKYTNDLPPRKDGNGFFVKGWWKDILQGKIFKELDQSGKMVLLIDILTMSSDVGDKVLVFSQSIPTLDLIELYLSKLPRSGKRGKLWKKGRDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFDFGDDENPETLAELSEQSNPILAGDSLKHTVPHSNGSSYSDKLMESLLGKHHPRWIANYHLHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPIGESVPDPKPEVSKAEEEQPEVETWQLSTKLRNRFTKRQCTNLAHLLTLRSQRIKIGGYTVCGECARVVRWEDLKK 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03269 1339 MobiDBLite consensus disorder prediction 398 485 - -
Mepo4g03269 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 836 IPR027417 -
Mepo4g03269 1339 MobiDBLite consensus disorder prediction 1 42 - -
Mepo4g03269 1339 Coils Coil 100 127 - -
Mepo4g03269 1339 MobiDBLite consensus disorder prediction 417 447 - -
Mepo4g03269 1339 Gene3D - 555 836 IPR038718 -
Mepo4g03269 1339 MobiDBLite consensus disorder prediction 338 361 - -
Mepo4g03269 1339 SMART helicmild6 1014 1111 IPR001650 -
Mepo4g03269 1339 MobiDBLite consensus disorder prediction 462 477 - -
Mepo4g03269 1339 MobiDBLite consensus disorder prediction 323 378 - -
Mepo4g03269 1339 CDD SF2_C_SNF 972 1122 - -
Mepo4g03269 1339 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 991 1159 IPR001650 -
Mepo4g03269 1339 Gene3D - 847 1189 IPR027417 -
Mepo4g03269 1339 SMART ultradead3 578 799 IPR014001 -
Mepo4g03269 1339 MobiDBLite consensus disorder prediction 63 82 - -
Mepo4g03269 1339 Pfam Helicase conserved C-terminal domain 987 1111 IPR001650 -
Mepo4g03269 1339 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 787 IPR014001 -
Mepo4g03269 1339 Pfam SNF2-related domain 605 906 IPR000330 GO:0005524|GO:0140658
Mepo4g03269 1339 Coils Coil 49 76 - -
Mepo4g03269 1339 MobiDBLite consensus disorder prediction 1265 1284 - -
Mepo4g03269 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 842 1178 IPR027417 -
Mepo4g03269 1339 PANTHER RAD54-LIKE 21 1336 IPR044574 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03269 Mepo-Chr4 42196048 42225151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03269 592 1141 RAD5 or RAD16-like Gene Family AT1G02670 26.079 1.99e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo4g03269 SNF2_N 2.5e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03269 K10779 - sind:105161157 1630.54