LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo4g03265	ATGACTACTACTAATCCAAGGGCAATTAAGGCCCTTGAGGCTATGAAGGACTTAGGAATCTCGGAGGGCGAGGTGAGACCGGTGTTGCTAAAGTTGTATAAATTGTATGATAAAAAGTGGGAGCTTATTGAAGATGACAATTATCGGACACTTATAGATGCATACTTTGAGTCAAAGGAAGATAAGGCATACTTTGAGTCAAAGGAAGATAAGCAAGAAGATCATAAGAGAAAAGCTCCAGCAAGTTGTCATGATGGAGAGAAACCTAAACAGAAACTTCACTTGGTAGATATAGACAACCAGATTTTGCCAGATGACAACTCAAGACAAGTGTTGTCTGTAGAAGACACTGGCATACCTCCCAAGACTTTTAAACAGGAAACTATGAAACCCTCTCAAATTTCCAGGCGAGATATGAAGCTCACAACCAATTCGCAGGGATTCATGGCTGCTAGAGATATAAAGATTTATCCTGGGGCAGCATCATCTGAAGGTCGTTGTAGAGATCCAATTGATGGACCTAGCCATCCTTCTATTCAGAGGAAAAATATGTCAAGAGGAAATGATAAACCTAAGTTTCATCCCGGATCTGTTTCGACAAGTTGCAATGGCTCACTAAATGCTTCCAATGGAAATCTTACTGTCAAATCCCTGTTAAGAGGAAATGATAAACCTAAGTTTTATCCTGGATCTGTTTCGACAAGTTGCAATGGTTCACTAAATGCTTCCAATGGAAATCTTACTGTCAAATCCCTGTCAGATGTGTATCAGAATACACACAAGATAGAAGCTACTCCTACATGCAATAATAACACCAGAACCAGTAAGGGTAATATTGATATTGGTTCTTCTTCACCCTTGGGAGAAGTTAAATCTTCTTTAGATTGTGATGCTGCATTAAGGACTGGCTTGAATTTAAATCGAAATGGGTCAAGGCAAACTCATTCTGAGGATAAGAAGAAATCCTTTCGATATGTCGAAGACATAACAAAAGGTTCTGAAAACATTAAAATATCATTATTAGACGAAACCAACAGTGAGGATTTTCCAAAATTTAATTATATTCCATGTAACACAATGTATCAAAGTGCAAATGTTAATATTTCACTTGCTCGGATTGCGGATGAGGATTGCTGCTCCGATTGTTCAGGCGATTGTCTTTCCTTGTCAGTTCCTTGTGCATGCTCTCAAGAAACTGGTGGAGAGTTTGCTTACACTTCACAAGGTTTGTTGAGTGAGAAGTTTTTAACAGATTGCATGTCTATGGTCAAGGAACCCCAGCATCATCATTATGTGTATTGTAAAGAGTGCCCAATTGAGAGGACTAAGAATGAGACCAAACCTGAATCATGCAAGGGACATCTGGTTAGGAAGTTTATAAAGGAGTGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGAGGTTTAAGCCGTAAATTGCAGGTGTTCTTGACTCAAGAAGGAAAGGGCTGGGGCGTTAGAACACTAGAAGATTTGCCCAAGGGATCCTTTGTCTGTGAATATGCAGGGGAGATTTTAACCAATTCAGAATTATATGACAGGATTGTGTATAGTACCGGCAATGATAGACATACATATCCGGTAACACTTGATGCAGACTGGGGCTCGGAAGTGGGATTAAAGGATGAAGAGGCATTATGCTTGGATGCAACACATAATGGGAATGTTGCAAGATTCATCAATCATAGATGCTTCGATGCAAATCTAATAGACATTCCTGTTGAAGTGGAGACACCTGACCGCCACTATTATCATCTTGCCCTCTTTACAAACAAAGATGTGAGTGCATACGAGGAGTTGACATGGGATTATGGCATTGACTTTGATGACCATACCCATCCTATTGAAGCATTTCAATGTTGTTGTGGAAGCGGTTTCTGCCGGGATAGGAAACAAAAAGGAACTAGATTAGCACAGACAAAAAAAGTCAGGCATACATATACAAAGAAATAA	1992	0.3991	MTTTNPRAIKALEAMKDLGISEGEVRPVLLKLYKLYDKKWELIEDDNYRTLIDAYFESKEDKAYFESKEDKQEDHKRKAPASCHDGEKPKQKLHLVDIDNQILPDDNSRQVLSVEDTGIPPKTFKQETMKPSQISRRDMKLTTNSQGFMAARDIKIYPGAASSEGRCRDPIDGPSHPSIQRKNMSRGNDKPKFHPGSVSTSCNGSLNASNGNLTVKSLLRGNDKPKFYPGSVSTSCNGSLNASNGNLTVKSLSDVYQNTHKIEATPTCNNNTRTSKGNIDIGSSSPLGEVKSSLDCDAALRTGLNLNRNGSRQTHSEDKKKSFRYVEDITKGSENIKISLLDETNSEDFPKFNYIPCNTMYQSANVNISLARIADEDCCSDCSGDCLSLSVPCACSQETGGEFAYTSQGLLSEKFLTDCMSMVKEPQHHHYVYCKECPIERTKNETKPESCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLSRKLQVFLTQEGKGWGVRTLEDLPKGSFVCEYAGEILTNSELYDRIVYSTGNDRHTYPVTLDADWGSEVGLKDEEALCLDATHNGNVARFINHRCFDANLIDIPVEVETPDRHYYHLALFTNKDVSAYEELTWDYGIDFDDHTHPIEAFQCCCGSGFCRDRKQKGTRLAQTKKVRHTYTKK	663

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo4g03265	663	SMART	set_7	484	624	IPR001214	GO:0005515
	Mepo4g03265	663	MobiDBLite	consensus disorder prediction	161	206	-	-
	Mepo4g03265	663	Pfam	Pre-SET motif	329	476	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Mepo4g03265	663	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	656	IPR025776	-
	Mepo4g03265	663	Pfam	Ubiquitin-binding WIYLD domain	6	60	IPR018848	-
	Mepo4g03265	663	SMART	preset_2	326	468	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Mepo4g03265	663	ProSiteProfiles	Pre-SET domain profile.	378	481	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Mepo4g03265	663	CDD	SET_SETDB-like	350	618	-	-
	Mepo4g03265	663	MobiDBLite	consensus disorder prediction	64	88	-	-
	Mepo4g03265	663	FunFam	SET-domain containing protein lysine methyltransferase family protein	329	643	-	-
	Mepo4g03265	663	ProSiteProfiles	SET domain profile.	484	618	IPR001214	GO:0005515
	Mepo4g03265	663	Gene3D	-	1	61	IPR043017	-
	Mepo4g03265	663	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	7	649	-	-
	Mepo4g03265	663	Pfam	SET domain	496	618	IPR001214	GO:0005515
	Mepo4g03265	663	Gene3D	SET domain	329	643	IPR046341	-
	Mepo4g03265	663	SUPERFAMILY	SET domain	336	641	IPR046341	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo4g03265	Mepo-Chr4	42158650	42167361	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo4g03265	326	641	Su(var)3-9 homologs	AT5G04940	27.083	2.48e-30	125

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Mepo4g03265		Pre-SET	6.7e-15	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo4g03265	-		-	gsj:114402909	838.95