Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03264 ATGTCTTCGTCTATTCCATCTTCCTCGATGCAGGCTGCATCAATCAATTCCAACATCAGAAGTGTTGGACACATGTTTTCAACCCCTTCTGAACAGCCTGATAACGTCCATTTTTCCTCTGCTTCAGAAATACATTCTATGACATTCCCTCAAGAAAGTGACGTTATGTCCTGGGGAACTGATCCATTTGAAGATATTCTTCAATTTCCTGATAATGTTCCCACCCAGAATGACCATTTGGAATACAATGGTTCTGAAGTCTTGGGTGGAAATGCCAAAACAACGGATTTCAAGGAGTGGGTTGATCAGTTGATGTCAGTCGATGACGATTCTATTCAGCCTAATTGGAATGAACTTCTCGGTGATAATAATATGGCAGAACCAAAATCACAGGAGGATGCACAGATGTCCCCTTCTCTATTGATGCAAGAGACTCAGGTTTCACAGCAGCAGTATATACCATCACTACCGTCTAAAGAAGTTAATGATCTTCCCAATTCTTCTGTGTCAACTACATCGCAATCTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTCTTGAACTTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCATCTGCAGAAATATAGAACTGCCAGATACAAACCAGAATCATCAGAAGGAATTCCAGAGAAGAAGTTGACTTCAATCGACGAAATGCCACCTATAGACTTAAAAACGCCTAAGGGGATTACAGAAGCATTGCGGCTGCAGATGGAACTCCAGAAGCGGCTACATGAACAACTTGAGATTCAAAGAAATTTACAGATTCAGATTGAGAACCAAGGGAAGCATCTACAGATGATGTTTGAGAAACAGATGAAGTCGGATGAGCCTTCTGCTCCACTATCAAGTGCCGCGCTACCTTCTCCAGTTGAAAATTTAGAAAACACAAACGAAGGTCACAAAAAAATTGGAATCAATGGCAGCACTTCAGACAACATGCCTGAAGGAAGTTCCCAGAATACAAGCACAGAGCAAAAGGGAGATGATGCTAAAGCTACCGGTGAACTTGAGCTGGGAGAAGACCAACTTGCCGCACCACCCACAAAACGAGTGAAGACTGACAAGTAG 1170 0.4299 MSSSIPSSSMQAASINSNIRSVGHMFSTPSEQPDNVHFSSASEIHSMTFPQESDVMSWGTDPFEDILQFPDNVPTQNDHLEYNGSEVLGGNAKTTDFKEWVDQLMSVDDDSIQPNWNELLGDNNMAEPKSQEDAQMSPSLLMQETQVSQQQYIPSLPSKEVNDLPNSSVSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEGIPEKKLTSIDEMPPIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKHLQMMFEKQMKSDEPSAPLSSAALPSPVENLENTNEGHKKIGINGSTSDNMPEGSSQNTSTEQKGDDAKATGELELGEDQLAAPPTKRVKTDK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03264 389 SUPERFAMILY Homeodomain-like 174 230 IPR009057 -
Mepo4g03264 389 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 149 355 IPR044848 GO:0003700
Mepo4g03264 389 NCBIfam myb-like DNA-binding domain, SHAQKYF class 176 230 IPR006447 GO:0003677
Mepo4g03264 389 MobiDBLite consensus disorder prediction 156 179 - -
Mepo4g03264 389 MobiDBLite consensus disorder prediction 304 389 - -
Mepo4g03264 389 Pfam MYB-CC type transfactor, LHEQLE motif 263 307 IPR025756 -
Mepo4g03264 389 Coils Coil 264 284 - -
Mepo4g03264 389 MobiDBLite consensus disorder prediction 112 136 - -
Mepo4g03264 389 FunFam Myb family transcription factor 175 233 - -
Mepo4g03264 389 Pfam Myb-like DNA-binding domain 178 229 IPR001005 -
Mepo4g03264 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 173 233 IPR017930 -
Mepo4g03264 389 MobiDBLite consensus disorder prediction 322 361 - -
Mepo4g03264 389 Gene3D - 175 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03264 Mepo-Chr4 42150762 42155092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03264 43 310 G2-like Transcription Factor Family AT3G04450 50.545 5.28e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mepo4g03264 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03264 - - psat:127093006 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03264 4 42150762 42155092 Mepo4g03264 4 42150762 42155092 ECH
Mepo3g03167 3 41753155 41759440 Mepo4g03264 4 42150762 42155092 ECH
Mepo3g03167 3 41753155 41759440 Mepo4g03264 4 42150762 42155092 PCT
Mepo3g04121 3 50372792 50376740 Mepo4g03264 4 42150762 42155092 PCT