Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03234 ATGGCAAACAATGAAGAACAGAAACATGCATTGAAGGACAAGTTGAAGGAACTTGTGAATACTATTGTGGAAGGTGATGACTTCACTGTGCATGCTGCTGATGAAGCTATCACTGCTCTTTCTGTTCTTAGGGATATGAAATGCAGTGCTTCTTTCTCTCGTAAATTGGATCATTTATCTCTTCCTGTTCCTCCAAAGTTTCGTTGCCCCATCTCAGGTCTTGTTATGACTGATCCTGTTATCTTGGCCATTGGACAGACTTTTGATCGACCATTCATCCAGAGGTGGCTCAATGAAGTCCTCAGAGTTTTCCCTCAAACTCAGCCTGTCCTCTCTCACTCCATCCTTTCTCCTAATTATTTGGTCCATGACATGATTTCAAGGTGGTGTAAGGAACATGGAGTTGAGCTGCCAATGCCTGTTGGGGACATTGATGATGGAGAAGTAACTGAAGCACACAAATACCGTTTACGTTCGTTGCTTCATAAACTGTCCTTGTCTGCATTGGATCAAAAAGAAGCCGCAAGAGAGCTTCGGCTGTTAACGAAGAGAATGCCGTCGTTTCAAAGACTCTTTGGTGACTCGGAAGTGATTCAGAAATTGCTCAGTCCGTTATCACCCGGCGTGGCTTGTACCGATCCCGAACTCCACGAGGACCTGATTACAGCTGTTCTAAATCTCTCATTTGATGAAAGCAACAAGAGAGCTTTTGTAGAGGATGAAAAGCTTATCACCTTTATTATCGATTCCTTGAAATCAGGAACCATACAAACAAGAAGCAATGCTGCTGCAGCTATTTTGTCATTATCAGCTCTTGATATCAACAAACACATTATTGGAAAAACTGATGCAATTAAAAATTTGGTTGATCTTTTAGAAAAGGGGCATCCATCATCAATGAAAGATGCAGTTTCGGCTATATTCAATCTCTGTATTGCACATGAAAATAAAGCGAGGACTGTTCGAGAAGGCGCAGTTCAGATTATTCTCAGCAAGATCATCATGGACCGTGTTCTAGTTGATGAGTTTTTTACTCTATTGGCACTTCTCTCCAGCCATTCAAAGGCTGTTGCAGCATTGGGAAGTCACGGCGCTGTCCCTTTCTTTATGGGTATTTTAAGGGATAACAGCATCTCGGATCGGAGCAAGGAAAACTGCGTTGCAATCTTGTACATCATATTTTTCAATGATAAAACAAAGAGGAAGGAAATAAAAGAAGATGAAATAGCCAATGGTACATTGTCTAAGCTTGCACAGTGTGGAACTTCAAGAGCTAAGAGGAAAGCTTCTGGTATTCTTGATAGGCTCAACATAGTTCAATCCTCAAAGCACATTACTTGA 1341 0.4146 MANNEEQKHALKDKLKELVNTIVEGDDFTVHAADEAITALSVLRDMKCSASFSRKLDHLSLPVPPKFRCPISGLVMTDPVILAIGQTFDRPFIQRWLNEVLRVFPQTQPVLSHSILSPNYLVHDMISRWCKEHGVELPMPVGDIDDGEVTEAHKYRLRSLLHKLSLSALDQKEAARELRLLTKRMPSFQRLFGDSEVIQKLLSPLSPGVACTDPELHEDLITAVLNLSFDESNKRAFVEDEKLITFIIDSLKSGTIQTRSNAAAAILSLSALDINKHIIGKTDAIKNLVDLLEKGHPSSMKDAVSAIFNLCIAHENKARTVREGAVQIILSKIIMDRVLVDEFFTLLALLSSHSKAVAALGSHGAVPFFMGILRDNSISDRSKENCVAILYIIFFNDKTKRKEIKEDEIANGTLSKLAQCGTSRAKRKASGILDRLNIVQSSKHIT 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03234 446 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Mepo4g03234 446 CDD RING-Ubox_PUB 64 116 IPR045210 -
Mepo4g03234 446 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
Mepo4g03234 446 Gene3D - 157 443 IPR011989 -
Mepo4g03234 446 Coils Coil 1 21 - -
Mepo4g03234 446 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 325 IPR000225 GO:0005515
Mepo4g03234 446 PANTHER U BOX DOMAIN-CONTAINING 29 435 - -
Mepo4g03234 446 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Mepo4g03234 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 136 IPR013083 -
Mepo4g03234 446 SUPERFAMILY RING/U-box 51 137 - -
Mepo4g03234 446 SUPERFAMILY ARM repeat 168 436 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03234 Mepo-Chr4 41757399 41759533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03234 125 444 U-box Gene Family AT3G07360 49.390 1.92e-92 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03234 - - gmx:100806132 539.265