Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03196 ATGAAGGGTGTTGCTGCCTATTTGCTTGCTGTTCTTGGTGGCGACAACACCCCCTCCGCCATAACCATCAAAGACATCCTCGGATCCGTTGGAGCAGACGCAGAAAATGATCAGATTGAGTTGTTTTTGTATGAAATTAAGGGCAAAGATATAGCTGAGGTTATTGGTTCTGGTAGGGAGAAGTTGGCATCAGTTCCGTCTGGTGGTGGCGGTGGTGGTGTTGCTGTTGCACCTGCGAGTGGTGGTGATGCTCTTGCAGCTGCTGAGGAAAAGAAAGAGGAGAATGTTTAG 291 0.488 MKGVAAYLLAVLGGDNTPSAITIKDILGSVGADAENDQIELFLYEIKGKDIAEVIGSGREKLASVPSGGGGGGVAVAPASGGDALAAAEEKKEENV 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03196 96 Pfam 60s Acidic ribosomal protein 18 94 - -
Mepo4g03196 96 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 93 IPR044076 GO:0002182|GO:0003735|GO:0022625
Mepo4g03196 96 FunFam 60S acidic ribosomal protein P2 1 59 - -
Mepo4g03196 96 CDD Ribosomal_P2 1 94 IPR044076 GO:0002182|GO:0003735|GO:0022625
Mepo4g03196 96 Hamap 50S ribosomal protein L12 [rpl12]. 2 95 IPR027534 GO:0003735|GO:0005840|GO:0006414
Mepo4g03196 96 Gene3D - 1 58 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03196 Mepo-Chr4 41285581 41286097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03196 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 70.000 2.52e-28 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03196 K02943 - ming:122089001 101.293