Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03181 ATGGAAGCATCTCATGAACAACAACTCTCTTTAGGCTCTAGAGAACAACAATCTTCTATCCCTTTCTCCATCATTGCTTATTCTTCTACAAGAGAGAGAGGAACAAGAGAAAGTGCACGTTACAATCTCTATGCATGCAAAACATGCAACAAAACTTTCAATTCATTTCAAGCACTTGGAGGCCATAGAAAAGTTCACAAGAAGCCTAGAGATGATTGTCAGGTTCAAGAGTTTCAATTCAAAATCAATAACAAATCAATTTTCCTTAAATTGAATAGTATCAAAGGTATGGGAAATATATATGCTAGCAGCAACAACAATAATAACACCAACACCACCACCACTACCAACAACAACAATAACACCACCACCAACAACAACAACAACAAAACCAAGGTTTATGGGTGCTCCATTTGTGGTTCTAAATTCACATCTGGCCAGGCACTAGGTGGCCATGTGACCTTCCACCATGCACCGGTGGAGGCAACCTCATCGACACCAATGGCTTTGAAACCAGACGAAGAAGATGAAGAACCACCTACAAAGAAAATGAATGTCTCTTTGGATTTGGATCTCAACCTTCCTGCAGCTTAA 594 0.399 MEASHEQQLSLGSREQQSSIPFSIIAYSSTRERGTRESARYNLYACKTCNKTFNSFQALGGHRKVHKKPRDDCQVQEFQFKINNKSIFLKLNSIKGMGNIYASSNNNNNTNTTTTTNNNNNTTTNNNNNKTKVYGCSICGSKFTSGQALGGHVTFHHAPVEATSSTPMALKPDEEDEEPPTKKMNVSLDLDLNLPAA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03181 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Mepo4g03181 197 PANTHER ZINC FINGER PROTEIN ZAT5 30 196 - -
Mepo4g03181 197 MobiDBLite consensus disorder prediction 105 126 - -
Mepo4g03181 197 Gene3D Classic Zinc Finger 106 188 - -
Mepo4g03181 197 Gene3D Classic Zinc Finger 25 94 - -
Mepo4g03181 197 MobiDBLite consensus disorder prediction 170 184 - -
Mepo4g03181 197 SUPERFAMILY beta-beta-alpha zinc fingers 43 156 IPR036236 -
Mepo4g03181 197 ProSitePatterns Zinc finger C2H2 type domain signature. 136 157 IPR013087 -
Mepo4g03181 197 SMART c2h2final6 44 66 IPR013087 -
Mepo4g03181 197 SMART c2h2final6 134 157 IPR013087 -
Mepo4g03181 197 MobiDBLite consensus disorder prediction 161 197 - -
Mepo4g03181 197 Pfam C2H2-type zinc finger 44 69 - -
Mepo4g03181 197 Pfam C2H2-type zinc finger 133 158 - -
Mepo4g03181 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 161 IPR013087 -
Mepo4g03181 197 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03181 Mepo-Chr4 41116780 41117671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03181 39 196 C2H2 Transcription Factor Family AT3G10470 38.172 1.57e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g03181 zf-C2H2_6 9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03181 - - mtr:25484557 296.975