Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03155 ATGACTAGGAAGAAGGTGAAACTTGCCTTTATCTTGAATGATTTGGCAAGAAAAAGAACCTACAACAAGAGAAAGAAGGGTATCATTAAGAAGGTGAGGGAGCTCACTATTCTTTGTGGAATTCCAGCTTGTGCTATAATTTCCAATCCGCTTGATTCTACAACAGAGGTGTGGCCAGATCTAGAGGGAGCCATACATGTGATTGAGAGGTATCAAAATGCATATATCAAACACAACAAAAATAATGTGAACCAAGAAAGTTTTCTTTTGCAACAGATTACTAAAACCAGGGAACAACTAGAAAAGCAAAGACAACAAAATAATGAGAATGAGCTGAACATTCATATGGTTAGGCACTTGCAAAACCAAGAGTTGCCTGATGATTTGACTGTTACGGATTTGAGAGATTATGATAAGCTAATTGAGAAAAAGATGAAGGAAATTGATGACAAGATTGTTGCACTCAGTTTATGA 474 0.365 MTRKKVKLAFILNDLARKRTYNKRKKGIIKKVRELTILCGIPACAIISNPLDSTTEVWPDLEGAIHVIERYQNAYIKHNKNNVNQESFLLQQITKTREQLEKQRQQNNENELNIHMVRHLQNQELPDDLTVTDLRDYDKLIEKKMKEIDDKIVALSL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03155 157 Coils Coil 90 113 - -
Mepo4g03155 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mepo4g03155 157 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Mepo4g03155 157 Gene3D - 14 121 IPR036879 GO:0003677|GO:0046983
Mepo4g03155 157 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mepo4g03155 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo4g03155 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo4g03155 157 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Mepo4g03155 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo4g03155 157 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03155 Mepo-Chr4 40889296 40889769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03155 1 152 MADS-box Gene Family AT5G26630 41.830 4.05e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo4g03155 SRF-TF 4.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03155 - - gmx:100792290 168.703