Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03138 ATGGTCGTTAGCGGAGGCAAATCCTTAAAACGTATGAAAAGAAGAGTCACCGCCGATTACCACGATTTCTTTTCATTCCCTTCACCATCCCTCGCCGCATCAGAGAGTTTCTCCGGCGGACCTTTTCGTTCTAACGTCCACACTTTCCTCACCAAGTACGCGCTTCTTCCACCGCCTTCCGCGTTGTTCCCGCACTTGCTGACGTGGCAGATCCTCTTCCGTGTCGGTGAGATCACCGAGGGTGGTGAATCGGGACCGGCGGTGATTTGCCTTGACGTTGTGGAAGAGGATGTTGCTAGATCCAGATCTGTGTATTGTGATCAGTGCCGAGTTTTCGGTTGTAGCGGGAATCCAGTGTGCGGTAAGCGTTACCATTTTATAATTAAAGCTGATGGGAGATCCATTGGTGGATACCACAAACCGTGTATGTGCTGTGGAGATATTTTGCATTTGTCAGAATCCAAGTGCAAGTCATGTAACCATGTGACAACCAATGATGATGTTGAAGACTGGGTGTACCACCAACTAGAGAACACAAGTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGATCTAGATTTCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGCTAGAAAAGTTAGTGTGATGGATGTTTCGAAGAAATATGGGCTAGAGTATCGCTTGCTCCATGCCATCATGAAGGGAAATCCGTGGTATGGTGAGTGGGGATATAATTTTGCCTCTGGTAGTTATTGTCTCACACAGGAAGCATACAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCATCTTCCTCTCCCAGGAACAGAAGCCGCACTCACGTGTGCAGGATATGATTTTGTATTACCGGTCTTTGTCAGAGCATGAGCTTGTAAATATGAGGGACCTATTTTGTTTTTTGATGGGTTTGCTGCATGATGCTCGCAAGACAGCCTCTAAGTCTGATGACATAACCTGCAAGAAGCGGCGGATTGATGCTTCTGGATTATCAAGTTCTTGGGAAAGGAGTGACGTTGAACGTGTGGAGGAAGCCATGCTCAGAGTGCTGCGGGCAGTGTCTGGGTCTAATTGGGTGAGTGGCCGAGCTCTTAGGGGTGCTGTTTGCAAGGTGGCCTCTCCAGAGCTTCTTGATTATTGCCTTGCTGAACTGGGAGGAAAAGTGGTCTATGGTGGGATTGTTAATAGCAGATGCAATCCTCAATCTGGAGTGAATGAATTCAGGATTGATGCTACCAATGTTTTTATGGCCAACAATAATTCTTCAGGTTCAAAGCGTCCCTCTGAAGAGAATATCCTGCAATGCTTGAGATATTTATACGACTCTCTGCTTCATCCTCGGATGATGCTAAACTATGTTGATGAAGAGACAAGAAATCTTGCAATGAGCTCGGCTCAGAAGCTTCTTGACTGCAAGCAATTAGTAAAAGATTATTGCTCTGAGATGTTGCCGGTGTCAGATTTATATAAATTACGTATCTCATGTCAGGTTGAACTAGTTGACCAATCTGAAGATACTGAAGCCAAAATTCCACCAGAAATAATTGTGCTGCCCATGAATGCCACGGTGTCTGACCTAAAGATTGAAGCAGCAAAAGCTTTTCAAGAAGTATATCTAATGTTTAGAAAATTTCAAGTTGACGAACTAGTTGGCTACAGTGGTGTAGAAGATTCCACCCAGGTCAAGTTCTTGTTAGGATCAAATGAAGTGGTTTGTGTTCGAGGAAAATACTCCGGGAAGAATGGGTTGAACAAGTTTCGAATGGAACGCGGACTTGAGAGGTGGACTGTTGAGTGCAGCTGTGGGGCTAAGGATGATGATGGAGAGAGAATGATGGCTTGTGATATGTGTGGTGTGTGGCGGCACACTAGGTGTTTTGGCATTCCTGATACTGCTCCAGTTCCAGCCCGTTTTGTTTGTTCGAGATGCCAAAACTGTGACTCAAAGCTTAAATCCGGTGGGCACTGTAAAGACGAGACTGTGGCTAATGTTACTACAACTAGTGGTAGTTGCATGGGAAACAGCTTTTCAGTGCCTTCTAATATTCGTTAA 2124 0.4539 MVVSGGKSLKRMKRRVTADYHDFFSFPSPSLAASESFSGGPFRSNVHTFLTKYALLPPPSALFPHLLTWQILFRVGEITEGGESGPAVICLDVVEEDVARSRSVYCDQCRVFGCSGNPVCGKRYHFIIKADGRSIGGYHKPCMCCGDILHLSESKCKSCNHVTTNDDVEDWVYHQLENTSHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGARKVSVMDVSKKYGLEYRLLHAIMKGNPWYGEWGYNFASGSYCLTQEAYKSAVESLSNLPLSIFLSQEQKPHSRVQDMILYYRSLSEHELVNMRDLFCFLMGLLHDARKTASKSDDITCKKRRIDASGLSSSWERSDVERVEEAMLRVLRAVSGSNWVSGRALRGAVCKVASPELLDYCLAELGGKVVYGGIVNSRCNPQSGVNEFRIDATNVFMANNNSSGSKRPSEENILQCLRYLYDSLLHPRMMLNYVDEETRNLAMSSAQKLLDCKQLVKDYCSEMLPVSDLYKLRISCQVELVDQSEDTEAKIPPEIIVLPMNATVSDLKIEAAKAFQEVYLMFRKFQVDELVGYSGVEDSTQVKFLLGSNEVVCVRGKYSGKNGLNKFRMERGLERWTVECSCGAKDDDGERMMACDMCGVWRHTRCFGIPDTAPVPARFVCSRCQNCDSKLKSGGHCKDETVANVTTTSGSCMGNSFSVPSNIR 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03138 707 SUPERFAMILY FYVE/PHD zinc finger 612 669 IPR011011 -
Mepo4g03138 707 CDD PHD_MMD1_like 622 667 - -
Mepo4g03138 707 ProSiteProfiles Zinc finger PHD-type profile. 620 670 IPR019787 -
Mepo4g03138 707 Pfam PHD-finger 623 670 IPR019787 -
Mepo4g03138 707 SMART PHD_3 622 668 IPR001965 -
Mepo4g03138 707 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Mepo4g03138 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 673 IPR013083 -
Mepo4g03138 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 14 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03138 Mepo-Chr4 40702801 40708503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03138 86 674 PHD Transcription Factor Family AT5G22260 29.825 9.24e-85 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo4g03138 PHD 2.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03138 K26271 - gmx:100818189 1125.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03138 4 40702801 40708503 Mepo4g03138 4 40702801 40708503 ECH