Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03107 ATGGTAGGATTGGAACTCATACCAATAGGTACAATTTTAACTGTGGTAACAAGCCAAGTCTTGAGAACAGCTCATGCAGCAGCTGATGTTCTTATTGGAAAAGAGAGTTTCAAGGCACTTTCGAAATACCTATTTGATATTGAGCCAGTGCTAAAGGAATTACAGCTTCAAGAATTGAATGATTCTCAACCTGCAAGAGTTGCTCTAGAGTCCCTTGAAGCAGATGTTAAAAGGGCGAATAATATGGTTGAGAAGTACAAGAACCGTGGCCGTTTCTACTTGCTAGTTAAATGCCGGTCCATAGTCGAGGAAGTTGAGCAAGTTACAAGGGATATTGGAAGGTCTCTGGCTGCACTGTCTATTGCAAATACTGAAGTACTTTCGAGAATTTCTGATCAGGTTGATAGACTACAAGGTGAGATGCAAAGGGTTGAGTTCGAGGCTTCACAATCTCAGCTTGAAATTGTTGACAAGTTGAACCAAGGACTAAGAGATCAGAAACAGGACCAGGCTTTCGCGAATGACATACTTGAGGAGATTGCAAGGGCGGTTGGCGTGCCGGTGGAACCATCCGAGATAGGAAAAGAGTTGGCCAGCATTAGAAAGGAAAAAGAAGAAGCTGCGAATAGGAAGGAAAAAGCCGAATTTGTTTTCTTGGAGCAGATCATTAAGTTACTCTCTAGAGCTGATGCAGCAAGGGATTATGAAGAAGTTAAGAATCAATATTTTGAAAGGGTTCAGGTGATAGAGAGATACGATTCAAGGGAAAAATATATCCAACCTCTTAATTCTTTCCTTTGCCGCATAAATGGAGCTGTTATGGTCGATCCTGTTAGCCTTTCCACGGGAACTACTTGTGAGAGATCAGCTATTGAAGGTTGGTTTTATGATGGAAACAGAACAGATCCAGAAACAAAAGAGGTTCTTGAAGATACTAGCTTGAGGTCTAACATTCCACTAAGACAATCGATCGAAGAGTGGAGAGAACTCAATTATTGTCTTTTGATAAGGTCTATCCGGGAAAATTTGTCATTAAATTCTGATCTGAAAGAATCCCTGAGCCAAATGCAGGCTCTAATAGCTGAAAATTCTATTAACAAGGATTGGATATCTATTGGGGAGGTTACTGATACCGTTATCTCGATCCTTGGGAACTCTAATGACAGAGAAGTGAAGATGAAGATTTTGATCACTTTGAAGGATGTTGTAGAGGGGCATGCAAGAAACAAGGAGAAATTGGCTGAATCTCAAGGATGGGATCATATTATTTCGTGCTTAGGAAACTCTAACATTTCAAAGGCAGCAATTGATTTGTTATATGAGTTGCTTCAAGAAAGATCTGGTTGGAATCAATGTTTCTGCAAAAAACTTTCTGAGAACGACACTGCAGTTCTTAACCTTGTAACCCTTGTGAAGGACCCTGGAAACGATTCAGCAGAGATTGCGAAGAAAATTTTGATGGAGCTTTTTGAAATAAATGAAAGCAGCATTGTCACAGCTGCTAATTGGGGCTGGTATAAGCCACTAGCTGATCGCTTGATTCGAGGACGGGATTCAAGAATATCAATGGCAAAAGCCATAGTTAATTTGGAGTTGGATGATTTAAACTTGATACAACTTGGAAAGGAAGGAGTTATAACTCCTTTGATAGAAATGCTGTCTGGCAGTATCGAGTCGAAAGACCTTTCATTATCAGCCCTGGTTAAACTAGCTGGATCTCATCCTAACAAGAGAATCATTGCTTCCTCTGGGGGTGTTCCTCCTATTCTAGGTTTAATGTTCTCTCCTCGAACAAGGGCATTCATTACAATTAAATGCTCCGAAATCCTCGAGAAACTTTCTTCTTCTGACGATGGAATTGATTTCTTTACTGATGGAGAAGGGAAACAACTTGAGTTAGATTCAATCATCACCAAATTGCTAGTTTTGCAACAGAGTTCCAACTCAGGCCACAACCTCCGCAAGCCCACCCTACGCGCTCTTCTTGGCATTTGCAAGTTCGAGACTGGTTTGGTGAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTTGATGATTCTGACTCAGAAGTCCGGGAGACTGCAATAAACCTGCTCTTTCTTTTCTCTCAGCATGAACCAGAAGGAGTAGTTGAATACCTTTTCAAGCCTAGAAGGCTAGAAGCTTTGATTGGATTCCTCGAGAACGACGACAATGATAATGTACAAATGGCTGCAGCTGGCTTACTTGCTAACCTACCAAAATCCGAACGAGAACTAACTACGAAGTTGATTGAAATGGGAGGACTTGATGCAATCATAAGCATTTTAAAAACAGGCAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGATCCTACAAATATTGAGTCACAACGCGATTTGGTTAAACGAGGAATATACCCTTTGCTTGTTGATTTTCTCAATACAGGTTCAGTCACTGCAAAGGCAATTGCAGCAGCTTTCATCGGCGATCTTTCTATGAGCACTCCAAAGCTCACAGTTGTTTCAAAACCTAACGGTTGCTGGTTTTTCAAATCATCACGCGTTTCTTTATGCGCAGCACACGATAGTGTATGCAGCGTGACCACAACATTTTGTCTATTGGAAGCGAACGCTTTACCTGGTTTGATAAAGCTGTTACATGGTGAAGTCCATGCAACTGCTTATGAAGCCATACAAACACTTTCTACATTGGTATTGGAAGAGTATCCGCAGAGGGGTGCTCGTTTGTTGCATGAGGAAAATGCAATGAGACCTTTATTGGAGATTTTGACTTGGGGTAGTGAGTCACTTAAGGCAGAAGCTTTAGGACTTCTGGAGAAGGTTTTTGTGTCAAAGGAAATGGTGGAATACTATGGAACGACGGCTAGATCGCGTTTGATTTGTTTGACCGGAAGTAATATTTATGGAGATGGACACCTTAGAAGGAAAGCTGCTAAGGTATTGTCATTGCTCGAACGTTATTCTAGGTCTTCATCATCTGCAATCTCTGGTGTTTTGGAGTGA 3039 0.4116 MVGLELIPIGTILTVVTSQVLRTAHAAADVLIGKESFKALSKYLFDIEPVLKELQLQELNDSQPARVALESLEADVKRANNMVEKYKNRGRFYLLVKCRSIVEEVEQVTRDIGRSLAALSIANTEVLSRISDQVDRLQGEMQRVEFEASQSQLEIVDKLNQGLRDQKQDQAFANDILEEIARAVGVPVEPSEIGKELASIRKEKEEAANRKEKAEFVFLEQIIKLLSRADAARDYEEVKNQYFERVQVIERYDSREKYIQPLNSFLCRINGAVMVDPVSLSTGTTCERSAIEGWFYDGNRTDPETKEVLEDTSLRSNIPLRQSIEEWRELNYCLLIRSIRENLSLNSDLKESLSQMQALIAENSINKDWISIGEVTDTVISILGNSNDREVKMKILITLKDVVEGHARNKEKLAESQGWDHIISCLGNSNISKAAIDLLYELLQERSGWNQCFCKKLSENDTAVLNLVTLVKDPGNDSAEIAKKILMELFEINESSIVTAANWGWYKPLADRLIRGRDSRISMAKAIVNLELDDLNLIQLGKEGVITPLIEMLSGSIESKDLSLSALVKLAGSHPNKRIIASSGGVPPILGLMFSPRTRAFITIKCSEILEKLSSSDDGIDFFTDGEGKQLELDSIITKLLVLQQSSNSGHNLRKPTLRALLGICKFETGLVKKAILAANGVSLILPLLDDSDSEVRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERELTTKLIEMGGLDAIISILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSVTAKAIAAAFIGDLSMSTPKLTVVSKPNGCWFFKSSRVSLCAAHDSVCSVTTTFCLLEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEEYPQRGARLLHEENAMRPLLEILTWGSESLKAEALGLLEKVFVSKEMVEYYGTTARSRLICLTGSNIYGDGHLRRKAAKVLSLLERYSRSSSSAISGVLE 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03107 1012 Coils Coil 69 89 - -
Mepo4g03107 1012 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1004 - -
Mepo4g03107 1012 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 723 751 IPR000225 GO:0005515
Mepo4g03107 1012 SUPERFAMILY ARM repeat 356 719 IPR016024 -
Mepo4g03107 1012 Gene3D - 519 845 IPR011989 -
Mepo4g03107 1012 SUPERFAMILY ARM repeat 635 999 IPR016024 -
Mepo4g03107 1012 Gene3D - 9 123 IPR036537 GO:0007166
Mepo4g03107 1012 Coils Coil 127 154 - -
Mepo4g03107 1012 CDD MLKL_NTD 34 145 - -
Mepo4g03107 1012 SUPERFAMILY RING/U-box 247 330 - -
Mepo4g03107 1012 Gene3D - 335 518 IPR011989 -
Mepo4g03107 1012 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Mepo4g03107 1012 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Mepo4g03107 1012 SMART arm_5 406 444 IPR000225 GO:0005515
Mepo4g03107 1012 SMART arm_5 798 838 IPR000225 GO:0005515
Mepo4g03107 1012 SMART arm_5 755 795 IPR000225 GO:0005515
Mepo4g03107 1012 SMART arm_5 711 753 IPR000225 GO:0005515
Mepo4g03107 1012 SMART arm_5 669 709 IPR000225 GO:0005515
Mepo4g03107 1012 SMART arm_5 573 615 IPR000225 GO:0005515
Mepo4g03107 1012 SMART arm_5 871 911 IPR000225 GO:0005515
Mepo4g03107 1012 SMART arm_5 533 572 IPR000225 GO:0005515
Mepo4g03107 1012 SMART arm_5 915 955 IPR000225 GO:0005515
Mepo4g03107 1012 Gene3D - 858 996 IPR011989 -
Mepo4g03107 1012 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 333 IPR013083 -
Mepo4g03107 1012 Coils Coil 197 217 - -
Mepo4g03107 1012 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03107 Mepo-Chr4 40397984 40402370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03107 264 967 U-box Gene Family AT1G20780 26.393 2.77e-36 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03107 - - gmx:100783638 1592.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03107 4 40397984 40402370 Mepo4g03107 4 40397984 40402370 ECH