Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03087 ATGGTAAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAGGGGTCCTTGGTCTCTTGAGGAAGATGAAATCCTTACATCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCTAGCAGGCTTGTTAAGGTGTGGGAAAAGCTGCCGACTTAGGTGGATTAACTATTTGAGACCAGATATCAAGAGAGGAAATTTCACAAATGAAGAAGAGGAAAATATCATTAAGTTGCATGAAATGCTTGGAAACAGGTGGTCAGCAATTGCAGCAAAACTACCGGGAAGAACGGACAATGAAATAAAAAATGTGTGGCACACGCATTTGAAGAAGAAGCTAAACCAAACAAACTCAGAAGCTAAGAAAAGGGTGATCTCAAAATCAAAAATCAAACGTTCTGATTCGAATTCAAGTACAATAACACAATCAGAATCAGCATCTGCATGCACTACAAGTTCTAGTGATTTTTCATCTGTCACTATTGGTGAAAGAAAGGATATAAAAAGTGAAGACATTGAGTCTATGGAGGACACAATGGCTGTAATTGATGAGAGTTTTTGGTCAGAAGCAGCAGCATTGGATGAAACTTCAACTGATATGAAATCAAGTCCTTTGACAATCTCAAATGAGATGTTGCCACTTCAATACCCTGATGAAATTCTTCCAGAGAGTCATGAAGATTATAATTCTAACTTGGATGATGGCATGGATTTTTGGTATGACATATTCATTAGGACTGGAGATCAAATAGAATTGCCTGAGTTTTGA 777 0.3861 MVRAPCCEKMGLKRGPWSLEEDEILTSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEENIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLNQTNSEAKKRVISKSKIKRSDSNSSTITQSESASACTTSSSDFSSVTIGERKDIKSEDIESMEDTMAVIDESFWSEAAALDETSTDMKSSPLTISNEMLPLQYPDEILPESHEDYNSNLDDGMDFWYDIFIRTGDQIELPEF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03087 258 SMART sant 13 63 IPR001005 -
Mepo4g03087 258 SMART sant 66 114 IPR001005 -
Mepo4g03087 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mepo4g03087 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mepo4g03087 258 CDD SANT 69 112 IPR001005 -
Mepo4g03087 258 Gene3D - 14 66 - -
Mepo4g03087 258 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mepo4g03087 258 CDD SANT 16 61 IPR001005 -
Mepo4g03087 258 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mepo4g03087 258 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mepo4g03087 258 Gene3D - 69 146 - -
Mepo4g03087 258 MobiDBLite consensus disorder prediction 134 156 - -
Mepo4g03087 258 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Mepo4g03087 258 MobiDBLite consensus disorder prediction 119 156 - -
Mepo4g03087 258 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mepo4g03087 258 FunFam Myb transcription factor 11 67 - -
Mepo4g03087 258 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03087 Mepo-Chr4 40149275 40152163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03087 1 258 MYB Transcription Factor Family AT2G31180 51.685 7.49e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo4g03087 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03087 K09422 - gmx:100807569 362.073