Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03081 ATGGGACAAGGGCAATCGAAAAGCGAATTGCTTTACCAGCAAGTCAGTTATGGGAATTCCGATGGAATCAAAGCCCTTCATAGAGAAGGTGCAGGTCTTGAGTGGATGGATAAAGAAGGAAAGACACCCTTGATTGTTGCTTGTATGAATCCTGAGCTTTACAATGTTGCTAAGACTTTGATTGAACTTGGAGCCAATGTCAATGCGTACCGCCCTGGTCGTCATGCTGGGAGTCCGTTGCATCATGCAGCTAAAAGGGGACTTGAAAGTATTGTTAAGTTACTTCTTTTACATGGAGCCAATCCTTTGCTCATGAATGATGATTGTCAAACTCCTCTTGAGGTTGCCAGGGCTAAAGGAAACAGCAATGTTGTTCGTGTAATCGAGAGTCATATATGCTTGTTCTCTGGTTGGCTGCGGGAGTTTCATGGACCTGGATTTCTAGAAGTTGTAGCTCCTAATTTGGTATCGAGAAAAGTTTGGGCGGTTGTTTTACCAGTAGGCTCCCGTGTTCTCACCACGCCTTACAAGTTGGAGCTTGCCGTGTATGCTTCTTTGCAGGATGCACGACCCCGTACAATTATTCCTCTGTGGAAGGCCAATTTAGAAGAACCAAAGCTTCGTCAGTCGGATCCATCAGTGGCAATTAGTGATAAGACTACCAGAACACGCCTTAAATTTGGGCCTGCAAGTGAGAATGACAGGCAACAACTTACTTGGTTTTCTAATGCTTGCAAAGGAATGCCGCAGGTAAGTCCAGCATTTTTGCATAATAATCTGCCTACAGTTCCACCAACAGCACCACCTGATGCTGAAGACCCAGAATTGGCTATGGCTATCCAAGCATCTATTCAGCATGCTCTTCACGAGAGGCCAAGCTTTCCTGATGCCCAGCCAAACTCTGAAGCAAGCTCTTCCATCAATGGAGTGAGTGCAGTGCAAGGTTTTCTTGGCACACCAAATATAAATGATAATGAAACTGTAGCTGTTCCAGGTGGCAATACTCAACATGTCCAGAACGATGACAATGTCTCTGCTGGCCATACTACTAGCGGTCTGGATTTGAATCCATCAGCTCCTCCATTTGCTGATGATGTTCAATTAGATGGCTCGATTCGTTATCCGTCAATTGATTCCAGCCCTGTTGATGTATCATCTCCAGTAGTTGAGAAGCTACCTGATGAAGAAGGGAAAACTGCTACTGCTGGTGGAAGTGGTTCAACGTGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAATGAGGTTAAAACAAAGAAATGGGGTTGCCCCGTTTGTCGAGCAAAGATAGACCAGATCATTAAGCTATATCACGTTTGA 1383 0.4519 MGQGQSKSELLYQQVSYGNSDGIKALHREGAGLEWMDKEGKTPLIVACMNPELYNVAKTLIELGANVNAYRPGRHAGSPLHHAAKRGLESIVKLLLLHGANPLLMNDDCQTPLEVARAKGNSNVVRVIESHICLFSGWLREFHGPGFLEVVAPNLVSRKVWAVVLPVGSRVLTTPYKLELAVYASLQDARPRTIIPLWKANLEEPKLRQSDPSVAISDKTTRTRLKFGPASENDRQQLTWFSNACKGMPQVSPAFLHNNLPTVPPTAPPDAEDPELAMAIQASIQHALHERPSFPDAQPNSEASSSINGVSAVQGFLGTPNINDNETVAVPGGNTQHVQNDDNVSAGHTTSGLDLNPSAPPFADDVQLDGSIRYPSIDSSPVDVSSPVVEKLPDEEGKTATAGGSGSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQIIKLYHV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03081 460 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Mepo4g03081 460 CDD RING-HC_XBAT35-like 405 458 - -
Mepo4g03081 460 SMART ring_2 409 447 IPR001841 -
Mepo4g03081 460 MobiDBLite consensus disorder prediction 342 362 - -
Mepo4g03081 460 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Mepo4g03081 460 MobiDBLite consensus disorder prediction 377 401 - -
Mepo4g03081 460 Pfam Zinc finger, C3HC4 type (RING finger) 407 454 - -
Mepo4g03081 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 459 IPR013083 -
Mepo4g03081 460 ProSiteProfiles Zinc finger RING-type profile. 409 448 IPR001841 -
Mepo4g03081 460 SMART ANK_2a 39 69 IPR002110 GO:0005515
Mepo4g03081 460 SMART ANK_2a 108 137 IPR002110 GO:0005515
Mepo4g03081 460 SMART ANK_2a 75 104 IPR002110 GO:0005515
Mepo4g03081 460 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Mepo4g03081 460 PANTHER ROLLING PEBBLES, ISOFORM B 393 457 - -
Mepo4g03081 460 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Mepo4g03081 460 MobiDBLite consensus disorder prediction 342 356 - -
Mepo4g03081 460 SUPERFAMILY RING/U-box 408 454 - -
Mepo4g03081 460 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Mepo4g03081 460 Gene3D - 3 144 IPR036770 -
Mepo4g03081 460 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03081 Mepo-Chr4 40113718 40120391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03081 403 457 C3H Transcription Factor Family AT3G06140 34.545 1.51e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03081 - - gmx:100789309 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03081 4 40113718 40120391 Mepo4g03081 4 40113718 40120391 ECH