Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03078 ATGTGCAACGGTTCGAATAGAAAACCTTGTCAAACTGGTTTGATTAGGGAAAATGAATGTCAAAGACAACAAGAACTTCATCATAAGATTTCAGCTTTGCTTGAGTTTTCGGCCAAAGATGATGTAATGGCGTTCACAAATGCTGTTGAAAAAGATGATCATGATGTTGATGAGGTAGGGTTATGGTATGGAAGGAAGGTTGGATCACGCGAAATGGGATATGAAGAGAGGACACCTCTTATGGTTGCTGCTTTATATGGAAGCACGGGTGTGTTGTCTTATATTCTCGGAACCGGTCGTGTTGATGTTAACCGAGCGTGCGGGTCAGATAGGGCTACCGCTCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTGCCGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCAGATATTAGTTCCGCTGATGCAAACGGTAACAGGTGCATCGACTTGATTGTCTCGGTTTCTAATAGTGTCTTCGGTTCAAGGAAGAGGATACTACAAGGTATACTTGAAGGTATAGATGATGTTGATGATGGCAACAGCGATTTCCTTAAGGAAATAGGTTTCCAAATGGTGGAGCAGCAACAAGATGTAGGTACACCTCGAACTGTGAAGAAAGATTATCCCATTGATCCATCCCTACCTGACATAAAGAATGGAATATATAGTACAGATGAATTTAGGATGTTTACATTCAAAGTGAAGACTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCTGGTGAGAATGCAAGGCGCCGTGATCCGAGGAAATATCATTACACATGTGTCCCTTGCCCCGAGTTTCGGAAGGGATCATGCAACAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAATGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGATATCAGATGCACGAGAAGGGTTTGCTTTTTCGCTCACAAGCCAGAGGAGCTTCGACCGTTGTATGCTTCTACCGGTTCTGCTCTACCTTCACCTACATCATATTCAAATTCACGAAGTGCTTCTTCAATGGATTCTTTCACATTGAGCTCTCCGTCTTCTTTGATACAATCTGTGTCGACGCCACCTTTGACTCCATCTGCAGCATCATCGCCTACGGCTGGAACCATGTGGCAGACTCAGATTCAGCTTCATGCTGCAGTCCCTACCCTTCAGATGCCAAGAAGCAGATTTAAAACTTCAATGAATGCTAGAAATAATGCTGAATTTCTGGAACTTGAAAATCGCCTTACAGGTCTTGGATCTCCTTCAAATAGGCTTGCAGGAGTGAATCCTACTAACCTTGAAAACATTTTCGGGTCATCAATACAATCTCCAACATCAATACAAGTGCATCAGAACACAAACCATCAACTTTGGGGCAATCCTTTTGATCTTACCAATTCAAATGTGATTGGATCATCACAATTTAGAGTTGATGCCTTTTCGAAGTGGAGCCAAAGCTTTATTGAGCGCAGCAGCGTTGCGAGCTTTACTTCCGAGCTTCCTTCTGCTAGTTCGGTTGCCATGGAACCTTCTGCCTTCTCTGGCTGGGGCTCTCCTGATGGAAAATTAGACTGGTCCATCCGCGACGATGAACTCAATAAAATGAGGAAATCTTATTCTTTCGGCATTCGAAACAGAAGTAGCACTTCAACAATGGCTGCTGCATTAAGTGTCGATGATCCAGATGTATTTTTCTGCCGAATCTTGGGTTAA 1755 0.4342 MCNGSNRKPCQTGLIRENECQRQQELHHKISALLEFSAKDDVMAFTNAVEKDDHDVDEVGLWYGRKVGSREMGYEERTPLMVAALYGSTGVLSYILGTGRVDVNRACGSDRATALHCAVSGCSAASAEVVKLLLDASADISSADANGNRCIDLIVSVSNSVFGSRKRILQGILEGIDDVDDGNSDFLKEIGFQMVEQQQDVGTPRTVKKDYPIDPSLPDIKNGIYSTDEFRMFTFKVKTCSRAYSHDWTECPFVHPGENARRRDPRKYHYTCVPCPEFRKGSCNKGDACEYAHGIFECWLHPAQYRTRLCKDDIRCTRRVCFFAHKPEELRPLYASTGSALPSPTSYSNSRSASSMDSFTLSSPSSLIQSVSTPPLTPSAASSPTAGTMWQTQIQLHAAVPTLQMPRSRFKTSMNARNNAEFLELENRLTGLGSPSNRLAGVNPTNLENIFGSSIQSPTSIQVHQNTNHQLWGNPFDLTNSNVIGSSQFRVDAFSKWSQSFIERSSVASFTSELPSASSVAMEPSAFSGWGSPDGKLDWSIRDDELNKMRKSYSFGIRNRSSTSTMAAALSVDDPDVFFCRILG 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03078 584 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Mepo4g03078 584 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 294 IPR000571 GO:0046872
Mepo4g03078 584 Gene3D - 271 332 - -
Mepo4g03078 584 ProSiteProfiles Zinc finger C3H1-type profile. 274 296 IPR000571 GO:0046872
Mepo4g03078 584 SUPERFAMILY Ankyrin repeat 38 156 IPR036770 -
Mepo4g03078 584 Gene3D - 12 184 IPR036770 -
Mepo4g03078 584 PANTHER UNKEMPT FAMILY MEMBER 35 575 IPR045234 -
Mepo4g03078 584 FunFam Zinc finger CCCH domain-containing protein 66 227 295 - -
Mepo4g03078 584 Pfam Ankyrin repeats (3 copies) 68 143 IPR002110 GO:0005515
Mepo4g03078 584 SMART ANK_2a 75 105 IPR002110 GO:0005515
Mepo4g03078 584 SMART ANK_2a 110 142 IPR002110 GO:0005515
Mepo4g03078 584 SMART c3hfinal6 269 295 IPR000571 GO:0046872
Mepo4g03078 584 SMART c3hfinal6 304 327 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03078 Mepo-Chr4 40084426 40086180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03078 25 556 C2H2 Transcription Factor Family AT5G12850 43.506 8.74e-144 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo4g03078 Ank_2 3.4e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03078 - - mtr:11423139 1008.44