Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03048 ATGAATTATTCAAGTGAAGAAGGTGATGATGGATATGATCAAGGGAAAAAACGTTCTTATGAATGCACATTTTGCAAAAGAGGGTTCACAAATGCACAAGCTTTAGGTGGTCACATGAATATCCATAGGAAAGATAGAGCTAAGGCTAGTAAGCAACCAAATTCTTCTTCATCACAAATTGGAACCAAATTCTACACCAATGATGAAACTATGGTCTTTCCTTTTGCTTCAGAACAAAATTCCTTTGTTGGTAATTACCAACCCTCAAATATGCATGGTTATTCATATGAACAACCAAGATCATATGAATATCCAACAGCATCACCAAATTACCTCGTTGGAAATTACCAAACTTCAAATGTGCATGGTTTTTCTTATGACTATCAAGGACCATCCAATTGGCATTTGAACCAAGAGCTTCAAGGTCCTGACTTGAGTCTTCAAATCGGTTCAACTCATTATGTTGATAATACACATCATCAAAGAATTAGGAGAGGAAATGATCAGGAGGAAAATGAAGTGGATTTGGAGCTAAGACTTGGTCAAGATTCAAGATTCACATCATAG 567 0.3616 MNYSSEEGDDGYDQGKKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKASKQPNSSSSQIGTKFYTNDETMVFPFASEQNSFVGNYQPSNMHGYSYEQPRSYEYPTASPNYLVGNYQTSNVHGFSYDYQGPSNWHLNQELQGPDLSLQIGSTHYVDNTHHQRIRRGNDQEENEVDLELRLGQDSRFTS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03048 188 SUPERFAMILY beta-beta-alpha zinc fingers 17 46 IPR036236 -
Mepo4g03048 188 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Mepo4g03048 188 Pfam C2H2-type zinc finger 20 44 - -
Mepo4g03048 188 PANTHER OS07G0101800 PROTEIN 17 183 - -
Mepo4g03048 188 Gene3D Classic Zinc Finger 10 80 - -
Mepo4g03048 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 47 IPR013087 -
Mepo4g03048 188 SMART c2h2final6 20 42 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03048 Mepo-Chr4 39812517 39813083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03048 20 181 C2H2 Transcription Factor Family AT5G43540 34.356 4.11e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g03048 zf-C2H2_6 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03048 - - psat:127093235 201.06