Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03012 ATGGATCTTGTAAGTAGAAAATACTTGATCCATTTTTCATCACAAGCTCTTGCTCCAACAACAAGTTCAAGTTCAATTTTTCATCCTCCTCATATGCATCATTCAAGCACAAGTTTTCCAATCATTGCAATTGCTATAATAGGAATATTAGCTACAATTTTCTTGCTTGTTTCTTACTACATCTTTGTGATCAAATGTTGTCTAAATTGGCACCGTATCGATCTTCTACGACGTTTCTCTCCGTCTAGAAGGCGACAAGATCCAACAACGATACACTCACCGGGGATAGAACCTCGTGGTCTAGACGAAGCAGTGATTCGGTTAATTCCGGTTATTCAATTCAAAGCAGAAGAAGAAAATAAAGACTCTGCTGGTTCAGAGAGTTTCTGTGAATGTGCTGTTTGTTTGAATGAGTTTCAACAAGATGAAAAACTTAGGATTATACCAAATTGTAGCCATGTTTTCCACATTGATTGCATTGATGTTTGGCTACAAAACAATGCTAATTGTCCACTTTGTAGAACAAGCATTTCATTAACAAGTAGGTTCCATTTTGATCAAATGCTTACACAAGGGCCATTTTCAACTCAAGATCAAAATCCAACAAGTGAAAATCACATTGGTGGTGATGAAGATTTTGTTGTGATCGAATTGAGTAATAATAATGCTATGGAATCACCATTACCATTACCAAGACCAAGTCCTATTAGTCCTTCACCAAGGAAAATGTTGGAGAATAGAAATGTGGAAAAGAAAGGAAGAAAAAAGTTGCATAAAGTGACAAGTATGGGAGATGAATGTATTGATATTAGAGCAACAAAAGATGAACAATTTTCAGTTCAACCAATTAGAAGATCATTTTCAATGGATTCATCAGGGGATAGACATTTCTATTTAGCAGTTCAAGAAGCTCTGCAGCAACAAAAGAGGCAAGTCAATGAAGTCAACAACACCATTGAAGGGTCTAGTGGTAGCAGTGGGAGAGTCAAGAGATCATTCTTTTCATTTGGATATGGAAGTAGATCTAGAAGTTCTTCTGTTCAACCTGTTTACTTAGATTCTTGA 1065 0.3624 MDLVSRKYLIHFSSQALAPTTSSSSIFHPPHMHHSSTSFPIIAIAIIGILATIFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRRQDPTTIHSPGIEPRGLDEAVIRLIPVIQFKAEEENKDSAGSESFCECAVCLNEFQQDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRFHFDQMLTQGPFSTQDQNPTSENHIGGDEDFVVIELSNNNAMESPLPLPRPSPISPSPRKMLENRNVEKKGRKKLHKVTSMGDECIDIRATKDEQFSVQPIRRSFSMDSSGDRHFYLAVQEALQQQKRQVNEVNNTIEGSSGSSGRVKRSFFSFGYGSRSRSSSVQPVYLDS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03012 354 Coils Coil 298 318 - -
Mepo4g03012 354 Pfam Ring finger domain 131 174 IPR001841 -
Mepo4g03012 354 SUPERFAMILY RING/U-box 131 180 - -
Mepo4g03012 354 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Mepo4g03012 354 CDD RING-H2_EL5-like 131 174 - -
Mepo4g03012 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 179 IPR013083 -
Mepo4g03012 354 PANTHER RING-H2 FINGER PROTEIN ATL16 20 350 IPR044600 GO:0016567|GO:0016740
Mepo4g03012 354 FunFam E3 ubiquitin-protein ligase ATL6 91 180 - -
Mepo4g03012 354 SMART ring_2 132 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03012 Mepo-Chr4 39257607 39259214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03012 1 353 C3H Transcription Factor Family AT1G04360 51.523 4.11e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03012 - - gmx:100775286 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03012 4 39257607 39259214 Mepo4g03012 4 39257607 39259214 ECH