Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02952 ATGGCAGATGCACCCAACCAATGCGAAGAAAGCCATGAGAGTGGTGGTGAACAGAGTCCACGTGGCTCTTCTTCTGCTTCACGTGAACAAGATCGTTTTTTGCCTATAGCTAACATTGGCAGAATCATGAAAAAAGCTTTACCTTCAAATGGGAAAATTGCTAAGGATGCTAAAGATACGATGCAAGAATGTGTTTCTGAATTCATCAGCTTTATTACTAGCGAGGCAAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATCAATGGAGATGATTTGTTATGGGCTATGGCTACTTTAGGATTTGAAGATTATATAGAACCACTTAAGGTGTACCTAGCAAGGTACAGAGAGTTAGAGGGTGATAGTAAAGGATCTGTTAGAAGCGGTGATGGATCTGGTAGACGAGATCAAGTTGGCGGTCCTCCAGGTCAAAATGCTCAGTTTGTTCATCAGGGTTCTTTGAGCTATATTGATTCCCAGGTGCATCCACAACATCTGGTTATGCCTTCAATTCAAAATCATGAATAG 531 0.4162 MADAPNQCEESHESGGEQSPRGSSSASREQDRFLPIANIGRIMKKALPSNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRELEGDSKGSVRSGDGSGRRDQVGGPPGQNAQFVHQGSLSYIDSQVHPQHLVMPSIQNHE 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02952 176 MobiDBLite consensus disorder prediction 11 31 - -
Mepo4g02952 176 Gene3D Histone, subunit A 20 149 IPR009072 GO:0046982
Mepo4g02952 176 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Mepo4g02952 176 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Mepo4g02952 176 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Mepo4g02952 176 MobiDBLite consensus disorder prediction 1 31 - -
Mepo4g02952 176 MobiDBLite consensus disorder prediction 122 153 - -
Mepo4g02952 176 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mepo4g02952 176 FunFam Nuclear transcription factor Y subunit B-3 22 143 - -
Mepo4g02952 176 SUPERFAMILY Histone-fold 30 135 IPR009072 GO:0046982
Mepo4g02952 176 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 145 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mepo4g02952 176 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02952 Mepo-Chr4 38577728 38582075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02952 2 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.456 5.59e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mepo4g02952 CBFD_NFYB_HMF 3.3e-29 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02952 K08065 - gmx:100815883 270.011