Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02851 ATGGAAAGAAGAGGTAGAAGAACCCTAGCAGCAATCCTTGAGAGGTCAGAAGCAGCCGCGAAGAAGCAAGAACCAGATCGAGCAAGTTTCCCTGCAATCATGGCGGATGTTGAACCTGAGGTAGCAGCACAAGGAGTTCCAAAGAAGAGAACATTTAAGAAGTTCAGTTTCCGTGGTGTTGATCTCGATGCTCTATTGGATATGTCCACTGATGAACTTGTCAAACTTTTCTCTGCTCGTGCACGTAGAAGGTTTCAACGTGGTTTGACCCGCAAGCCTATGGCACTCATCAAGAAGCTCCGCAAGGCGAAAAGGGAAGCACCACCGGGTGAGAAGCCAGAACCAGTGAGGACTCACCTCCGTAACATGATCATTGTGCCTGAGATGATCGGTAGCATCATTGGTGTCTACAATGGAAAGACCTTCAATCAAGTTGAAATTAAGCCTGAAATGATTGGTCACTATCTGGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCACGGTAGGCCTGGTATTGGTGCCACTCACTCCTCCAGGTTTATTCCTCTCAAGTGA 558 0.4713 MERRGRRTLAAILERSEAAAKKQEPDRASFPAIMADVEPEVAAQGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02851 185 Gene3D 30s Ribosomal Protein S19; Chain A 42 185 IPR023575 GO:0003735|GO:0005840|GO:0006412
Mepo4g02851 185 SUPERFAMILY Ribosomal protein S19 88 169 IPR023575 GO:0003735|GO:0005840|GO:0006412
Mepo4g02851 185 PRINTS Ribosomal protein S19 family signature 138 150 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mepo4g02851 185 PRINTS Ribosomal protein S19 family signature 118 137 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mepo4g02851 185 PRINTS Ribosomal protein S19 family signature 150 165 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mepo4g02851 185 ProSitePatterns Ribosomal protein S19 signature. 138 162 IPR020934 GO:0003723
Mepo4g02851 185 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 42 185 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mepo4g02851 185 Pfam Ribosomal protein S19 83 168 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mepo4g02851 185 NCBIfam 30S ribosomal protein S19 52 185 IPR005713 GO:0003735|GO:0006412|GO:0015935
Mepo4g02851 185 FunFam 40S ribosomal protein S15 42 185 - -
Mepo4g02851 185 Hamap 30S ribosomal protein S19 [rpsS]. 81 174 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02851 Mepo-Chr4 37392981 37395586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02851 34 185 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.816 2.18e-95 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02851 K02958 - tpra:123918140 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02851 4 37392981 37395586 Mepo4g02851 4 37392981 37395586 ECH