Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02810 ATGGCAATGAACAAGAACCAATTCTACAAGCTTGGATACCAAGCTCTACCACCTATCATAACTCAGGATAATACATTTTATCCTCACCCTCCACAACCTGTTTCAGACTATGCTTTTCCAATATTTGCCATTGTTGTTCTAAGCATCATGGCTACCATTTTGTTGCTCCTTAGCTACTTCACTTTTTTAACCAAATGCTGCTCAAACTGGAACCAAGTTAACCCAACGAGATGGATTTCGGTCCTTCGAGTTCAACAAAACGAGGAAGATCACTTTATAGCGTTGTCTCCTACATTGTGGAACCGAGGACTAGACGAATCAGTCATCAGAGAAATCCCATCTTTTCAGTTTATGAAAGGAGAATGTGAGGATCAAAGTGTGTATGGTTGTGTGGTTTGTTTGACAGAGTTTCAAGAACAGGATGTGATAAAAATTCTTCCAAATTGCAACCATGCTTTTCACTTGGATTGCATTGATATTTGGCTTCAAACAAATTCTAATTGCCCTCTTTGTAGATCAAGCATTTCAGGAAATACAACAAACACTCAATTTGACATTATCATAGCTCCAAGTTCTTCACCTCAGGATTCTCAGTTACTCTCTAACTTAGGTAGTGATGAAGATTATGTGGTCATTGAATTAGGTGGAGGAGAAAATGAGGTTGAACAAGAAAGAAATGAGTCAAGGGGAAGCATAGAACATAGTAGAAATTATCACTCTACAAGGAAAATGAAACCAAAGAAGTGTCATCATGTTTCCATCATGGGAGATGAGTGCATTGATATCATCAGAAAGAAAGATGACACATTTTCAATTCAGCCTATTCGAAGATCTTTCTCGATGGATTCTGCAAATGATAGACAAGTTTTCATGGATGTTCAAGCCATTATACAACAAAATAGGCACCACCAGAATGAAGCTAGTGCAAGTGAGGATTGTAATAGCAGAAGTAGACGACAATTCTTTCCATTTTGTTATTATGGAAAGGGATCCAAAAATGCAGTTCTTCCTTTTGAAGAATGA 1023 0.3763 MAMNKNQFYKLGYQALPPIITQDNTFYPHPPQPVSDYAFPIFAIVVLSIMATILLLLSYFTFLTKCCSNWNQVNPTRWISVLRVQQNEEDHFIALSPTLWNRGLDESVIREIPSFQFMKGECEDQSVYGCVVCLTEFQEQDVIKILPNCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTTNTQFDIIIAPSSSPQDSQLLSNLGSDEDYVVIELGGGENEVEQERNESRGSIEHSRNYHSTRKMKPKKCHHVSIMGDECIDIIRKKDDTFSIQPIRRSFSMDSANDRQVFMDVQAIIQQNRHHQNEASASEDCNSRSRRQFFPFCYYGKGSKNAVLPFEE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02810 340 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Mepo4g02810 340 MobiDBLite consensus disorder prediction 218 239 - -
Mepo4g02810 340 CDD RING-H2_EL5-like 130 172 - -
Mepo4g02810 340 SUPERFAMILY RING/U-box 129 178 - -
Mepo4g02810 340 SMART ring_2 130 171 IPR001841 -
Mepo4g02810 340 PANTHER RING-H2 FINGER PROTEIN ATL16 18 338 IPR044600 GO:0016567|GO:0016740
Mepo4g02810 340 MobiDBLite consensus disorder prediction 216 245 - -
Mepo4g02810 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 177 IPR013083 -
Mepo4g02810 340 Pfam Ring finger domain 130 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02810 Mepo-Chr4 36898862 36900077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02810 30 302 C3H Transcription Factor Family AT1G04360 44.839 1.78e-67 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02810 K19041 - gmx:100809883 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02810 4 36898862 36900077 Mepo4g02810 4 36898862 36900077 ECH
Mepo4g02810 4 36898862 36900077 Mepo3g03112 3 41236670 41237910 PCT