Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02779 ATGCCCTTCCAGAAGATCTGCAATAATATGGTTGGGGTGTTAAAGCGTTTGAAGCCAGTACTCGATGATGTTATGGATTACAAAATTCCTTTACATCAAAATTTATGTAAAGCATGTCAAGAATTGGATATGCGTGTTAACGAGGCAAGGGATTTCATTGAAAAATGGGGTCCAAAGACGAGCAAGATTCACAGTGTTCTACAAAGTGGTACATTGTTGATCAAGTTACAAAGCACTTCACTTGACATTTGTCACATAATAGTTAAATCCTTAGAGTCACCACCATCTGCATCGGTTTTGGCTAACCTCCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAACAGCAATGGTCTATATAGAAAAGGCACTGAGAGAGCAAAGAGATGATACTGAACCTTGCAAGGAAAATCTAAAGGAAATTATTGAGTTACTTAAATTGACATCAACTCAGGAGCTCTTGAAAGAGACTATTGCCGTGGAAAAGGAAAGATTGAACGCTGAAGGACATAAAATGAAAGGAGACTTGGAAGAAATCAATGAAATTGTGAATCTTGTCCGCGTCTTACGTGATTATGTGATGAAAACTGAGTACTTTGCAGTCAAAAGTGGTGTCTCATTCCCTCCGTACTTTCGTTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCCGGTCAAACATACGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCAAAGACTCGTCAAAGACTTACTCATACAAATCTTATTCCCAATTATACTGTGAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAACACCAACCGTTCTAGTAATTCTGAGCATAATACTGGAAATGCATTTGAAGAACAAAAGGGCGATAACTCTTTCAGATCCAATGGAGAATGCAATGGATGCCAGAATATAGAAATAGAAAAGTGGGAGCTACAAGCACCATATATTCACAGCAGAAGTGAATCCTTTTCAAGTTCAATTTCTAGTAGTGATTGTCTACTTGCAGTTTCAAAAGATGTATCAAGGGTGTCCGATAAGTATCAAATTACGAAGGTGTCGTCCGTAGATGCGGGAGGGATAGAAAATGGAAAAAATAATAACAGTAATACTACTAATAGTCATTCAAGAGTTGATTCACATCTTGTTTCAAACTCGGGATTGAATGAATTGACCACCTCGTCTCATGTCAATAAATTGATCGAAGATCTCCAAAACGAATCAATTGAAGTGAAAAGTACTGCTGCAGAAGAACTGAGGCTCCTTACAAAGCATAACACGGAAAACCGTATCATTGTAGGGCAGTGTGGGGCTGTCATGCCTTTACTTTCGCTGCTATATTCAGACGGGAAAGCTACACAAGAGCATGCTGTGACAGCTCTGCTTAATTTATCAATTAATGAAGACAACAAAGCCTTGATTATGGAAGCGGGGGCTATAGAACCCCTTATCCATGTTTTAAAGACAGGAAATGATGGTGCCAAGGAGAATTCTGCGGCAGCTCTATTCAGCCTCTCTGTAATGGAGAACGGTAAAGCAAAAATCGGCCGTTCCGGTGCAATTAAAGCATTGGCGGAACTTCTTGCCTCAGGAACACTTAGAGGAAAGAAGGATGCTGCTACTGCTTTATATAACCTCTCAATATTTCACGAGAATAAAGCTCGAATAGTTCAAGCTGGAGCCGTGAAATTTCTGGTTGAGTTAACAGATCCTGCCGATGGAATGGTTGACAAGGCTGTTGCCCTTCTGTCAAACCTGTCGACAATTGCGGAGGGAAGGTTAGAAATTGCAAGAGAAGGTGGCATCCCGTCATTAGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATTCTCTTACAGTTATGCCTTCATAGTTCCAGGTTTTGTACACTGGTTTTACAAGAAGGAGCTGTACCTCCCTTAGTTGCATTATCTCAATCTGGTACTCCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAATCAACGGGAAGCAGCTACGACAAAGGGAAAATCATGA 2082 0.4054 MPFQKICNNMVGVLKRLKPVLDDVMDYKIPLHQNLCKACQELDMRVNEARDFIEKWGPKTSKIHSVLQSGTLLIKLQSTSLDICHIIVKSLESPPSASVLANLQHYIQELQCLKKETAMVYIEKALREQRDDTEPCKENLKEIIELLKLTSTQELLKETIAVEKERLNAEGHKMKGDLEEINEIVNLVRVLRDYVMKTEYFAVKSGVSFPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLIPNYTVKAMIATWCEENNTNRSSNSEHNTGNAFEEQKGDNSFRSNGECNGCQNIEIEKWELQAPYIHSRSESFSSSISSSDCLLAVSKDVSRVSDKYQITKVSSVDAGGIENGKNNNSNTTNSHSRVDSHLVSNSGLNELTTSSHVNKLIEDLQNESIEVKSTAAEELRLLTKHNTENRIIVGQCGAVMPLLSLLYSDGKATQEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVMENGKAKIGRSGAIKALAELLASGTLRGKKDAATALYNLSIFHENKARIVQAGAVKFLVELTDPADGMVDKAVALLSNLSTIAEGRLEIAREGGIPSLVEIVESGSQRGKENAASILLQLCLHSSRFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREAATTKGKS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02779 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 448 490 IPR000225 GO:0005515
Mepo4g02779 693 Pfam U-box domain 210 280 IPR003613 GO:0004842|GO:0016567
Mepo4g02779 693 ProSiteProfiles U-box domain profile. 208 282 IPR003613 GO:0004842|GO:0016567
Mepo4g02779 693 SMART arm_5 519 559 IPR000225 GO:0005515
Mepo4g02779 693 SMART arm_5 600 640 IPR000225 GO:0005515
Mepo4g02779 693 SMART arm_5 437 477 IPR000225 GO:0005515
Mepo4g02779 693 SMART arm_5 560 599 IPR000225 GO:0005515
Mepo4g02779 693 SMART arm_5 478 518 IPR000225 GO:0005515
Mepo4g02779 693 PANTHER U BOX DOMAIN-CONTAINING 4 681 - -
Mepo4g02779 693 SUPERFAMILY RING/U-box 207 281 - -
Mepo4g02779 693 MobiDBLite consensus disorder prediction 369 391 - -
Mepo4g02779 693 FunFam RING-type E3 ubiquitin transferase 393 686 - -
Mepo4g02779 693 MobiDBLite consensus disorder prediction 280 303 - -
Mepo4g02779 693 FunFam RING-type E3 ubiquitin transferase 206 282 - -
Mepo4g02779 693 Gene3D - 482 692 IPR011989 -
Mepo4g02779 693 MobiDBLite consensus disorder prediction 371 391 - -
Mepo4g02779 693 Coils Coil 670 690 - -
Mepo4g02779 693 Gene3D - 360 481 IPR011989 -
Mepo4g02779 693 Pfam Armadillo/beta-catenin-like repeat 478 517 IPR000225 GO:0005515
Mepo4g02779 693 Pfam Armadillo/beta-catenin-like repeat 437 476 IPR000225 GO:0005515
Mepo4g02779 693 Pfam Armadillo/beta-catenin-like repeat 523 558 IPR000225 GO:0005515
Mepo4g02779 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 293 IPR013083 -
Mepo4g02779 693 SUPERFAMILY ARM repeat 398 680 IPR016024 -
Mepo4g02779 693 SMART Ubox_2 212 275 IPR003613 GO:0004842|GO:0016567
Mepo4g02779 693 CDD RING-Ubox_PUB 210 262 IPR045210 -
Mepo4g02779 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 489 531 IPR000225 GO:0005515
Mepo4g02779 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 530 572 IPR000225 GO:0005515
Mepo4g02779 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 571 612 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02779 Mepo-Chr4 36488180 36491880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02779 2 693 U-box Gene Family AT3G54790 52.973 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02779 - - mtr:25484253 1240.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02779 4 36488180 36491880 Mepo4g02779 4 36488180 36491880 ECH