Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02769 ATGGAAGAAGAACAGGATCGAATTTTGCTCTCTACTTTAGGCGTTCAATCCGCCAATCCCGAAGACATCGAACGCCACATTTTCGATAAGGCTAGGAATGATTCAGTGAATGTTACTGAAGATAAAGGGAATAATGATGAATATGAATGTGAACGTTTACCTGAAAACGTTGATCCTTTATCGAAAGCTAAAGCTGAACTTCATCAGAAGTTGAGAGCGATAGAATTTGAAATCGGTGCAGTTTCTTCGACAATTGAAAGGCCCAGAGATGTTGTTAACAGTGAAGAATGTGAGGAGAATGAGAATTTGGAGGAAGGGATTGATGAGGGTGGTGGTTCGAAACTTCAGCGTGTTCTTGCTGCCGATAGGTTAAGAAGTTTGAAGAAAACGAAGGCTCAATTGGAGAAAGAGCTTAAAAGTTTGTCTAAGGACGGTGATTTGAAAAGTACCGAGAGTAAAAAAGTTATCTTTAGATTAGTTAAGGAGGATAGAAAACCAAAGAAGAAGCTTATAGATGATAAGAAATTAAGTAAAAGACCTGCAAAGCGGTTTAAGACGGTCTCATTTGATGATGATGATGATTTTGATGCTGTTCTCGATGCAGCCTCCGCTGGATTTGTCGAAACTGAAAGGGATGAATTGGTTAGAAAAGGAATGTTCACCCCTTTTCATAAGTTGAAGGGGTTTGAGCGCGGCATTCAACAACCCGAAGCATCAACTAATCGTAATGCAGTTGAGCAAGAAAATACCAACGATCTTGCTTATTCCAGTGTTGAAAGAGCTGCCAGATCATTTTCTCAGGCAGCAAAAGCTCGCCCAACCTCCAAGCTGCTTAGGCCTGAAGAGGTACCAAAGCTTGATGCACCCACCATTCCTTTTCGCAGGCTCAAGAAACCAATGCAATTACCCACACCTCTAGACGACAATGAGGGGGATCTGAATGCAGATTCAAAAAGGAAAAAGAAGCGACCTGGGCCTGGTAGGAAATGGACCAAGCGTGTTTCTTCTGAGGATAGACAACTGGGTGAAAGTGAAAATGCTAATGGTTGCTTAGACAATTCCAATTGTGAAAGTTTAGAAGAAGTGAATGATGTTGAACTTTCTGAACATGAATCTTCGTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGATGTGGGAGTTGCACTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTATACAAGTATTGTCATTTCTGGGTGCCTTGCATTTTAGTGGCATCTACAAACCCAGCATTATTGTCTGTCCTGTTACACTCCTGCGACAATGGAAAAGGGAAGCAAAAAAGTGGTATCCTAAATTCCATGTTGAACTTTTACACGATTCTGCTCAGGATCTGGCTTCTAAAAAGAAGCGAGCTGAATCCGATGGAACAGACTCTGAAAGCAATAGTTCAAGCGACAATGATTATGAGAAAAGTGTACCATCTAAAAATACAAGAAAATGGGAAACCCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTCATCACCACCTATGAGCAACTAAGGATATTGGGAGACCAGTTGCTTAATATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATTAGGAATCCAAACGCAGAAGTTACCCTAGCTTGCAAGCAGCTACAAACTGTACACCGCATAATAATGACTGGTGCACCTATTCAGAACAAACTGAGTGAGTTATGGTCGTTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTATTGCCTGTGTTTGAAGCCGAGTTTGCAGTTCCTATAAGAGTTGGTGGATATTCAAATGCTTCTCCGTTACAAGTATCCACAGCATACAGGTGTGCGGTGGTGCTGCGTGATTTAATTATGCCTTATCTTCTCCGGCGAATGAAGGCTGATGTAAACGCTCAGCTTCCAAAGAAAACTGAGCACGTTCTGTTTTGCAGCCTTACACCAGAGCAAGTATCTTCTTATAGAGCATTTTTGGCAAGCACCGAGGTGGAGGAAATATTGGATGGAGGCAGGAATTCACTTTATGGAATTGATGTGATGCGTAAGATCTGCAATCACCCAGACCTACTTGAAAGGGAACAGGCCTTCAGCAATCCAGATTATGGAAATCCTGAACGCAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAGCAGGGCCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATATTTGACCACTTGTGGACATATTTACCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATGGACGAGTTTAATGCCTCCAGTGAGATTTTTGTTTTCATTTTAACAACCAAAGTTGGGGGGTTGGGGACAAATCTTACTGGGGCAGATAGAGTGATCATCTTTGACCCTGATTGGAATCCTTCGACTGATATGCAGGCTAGAGAGCGTGCGTGGCGAATTGGTCAGAAACGGGATGTAACTATATATAGGTTAATCACACGTGGAACTATAGAGGAGAAAGTATATCATCGTCAGATTTACAAACATTTTCTTACGAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAGGCTCGAGATATGAAGGATCTTTTTGTTTTGAATGTGGATGGAGAAACTGGGTCAACAGAAACGTCAAATATTTTCAGTCAAATATCTGAAGATGTAAATATTATTGGGGCACATCAAGAAAATCAGGATAATAATGAATATAGTCAAACTGTTGAACTGGGTTCTGAAGATGATGCAGTTGGTGATGATGGCAAATCACGCAGAGGATCTTCAAGAGGAAAAGGGAAAGAGAAGATTGACAAAAGTAACGGGGTTGATGAAGAAGCAAATATATTGAGAAGTCTTTTTGATGCTAATGGGATACATAGTGCCATGAACCATGATTTGATCATGGATGCCCATGATGAGGAGAAGATGAGACTTGACGAGGAAGCTTCCAAGGTTGCGCAAAGAGCTGCAGAAGCTTTACGTCAATCAAGAATGATCCGAAACCATGAAAGCGTCTCGGTTCCTACATGGACAGGAAGGTCAGGAGCTGCTGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAAACCCCAGTTGCTAAACAATAGCAAAGCATCTGATGAATCACCAAACCAGGGATCTAACAAATTCAATGGATATGCTGCTGGGGCTTCTTCTGGTAAGGCATTATCTTCTGCTGAAATATTATCCAAAATTCGAGGTAATCAAGAAAAAGCCATCAGTGCCGGGCTTGAGCATCAGTTTGGTCAGTCAAAGTCTGTAGATGTTAGAACTTCCAGGGCTCCTGAAAATTCATCTGGATTCCAACCTGAAGTAATGATTCGGAAAATCTGTACCTTTTTCCAACAGAAAGGTGGCAGTTGTAGTTCAGACAGCATAGTTCAGTATTTCAAGGACAGGATTCCCTCAAAAGATCTTCCCCTGTTCAAGAATATGTTAAAGGAAATAGCGACTCTGCATAAAGGGTCAAATGGTTCCCATTGGGTTCTGAAGCCAGACTATCAAGTATAG 3648 0.4131 MEEEQDRILLSTLGVQSANPEDIERHIFDKARNDSVNVTEDKGNNDEYECERLPENVDPLSKAKAELHQKLRAIEFEIGAVSSTIERPRDVVNSEECEENENLEEGIDEGGGSKLQRVLAADRLRSLKKTKAQLEKELKSLSKDGDLKSTESKKVIFRLVKEDRKPKKKLIDDKKLSKRPAKRFKTVSFDDDDDFDAVLDAASAGFVETERDELVRKGMFTPFHKLKGFERGIQQPEASTNRNAVEQENTNDLAYSSVERAARSFSQAAKARPTSKLLRPEEVPKLDAPTIPFRRLKKPMQLPTPLDDNEGDLNADSKRKKKRPGPGRKWTKRVSSEDRQLGESENANGCLDNSNCESLEEVNDVELSEHESSYVTLEGGLKIPDNIFEALFDYQKVGVQWMWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGIYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDLASKKKRAESDGTDSESNSSSDNDYEKSVPSKNTRKWETLINRVMRSESGLLITTYEQLRILGDQLLNIEWGYAVLDEGHKIRNPNAEVTLACKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIRVGGYSNASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVSSYRAFLASTEVEEILDGGRNSLYGIDVMRKICNHPDLLEREQAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKYLTTCGHIYRRMDGLTPVKQRMALMDEFNASSEIFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQISEDVNIIGAHQENQDNNEYSQTVELGSEDDAVGDDGKSRRGSSRGKGKEKIDKSNGVDEEANILRSLFDANGIHSAMNHDLIMDAHDEEKMRLDEEASKVAQRAAEALRQSRMIRNHESVSVPTWTGRSGAAGAPSSVRRKFGSTVKPQLLNNSKASDESPNQGSNKFNGYAAGASSGKALSSAEILSKIRGNQEKAISAGLEHQFGQSKSVDVRTSRAPENSSGFQPEVMIRKICTFFQQKGGSCSSDSIVQYFKDRIPSKDLPLFKNMLKEIATLHKGSNGSHWVLKPDYQV 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02769 1215 MobiDBLite consensus disorder prediction 951 975 - -
Mepo4g02769 1215 MobiDBLite consensus disorder prediction 1045 1092 - -
Mepo4g02769 1215 CDD CSB_WHD 1148 1214 - -
Mepo4g02769 1215 MobiDBLite consensus disorder prediction 946 975 - -
Mepo4g02769 1215 MobiDBLite consensus disorder prediction 288 353 - -
Mepo4g02769 1215 Pfam Helicase conserved C-terminal domain 741 848 IPR001650 -
Mepo4g02769 1215 MobiDBLite consensus disorder prediction 234 251 - -
Mepo4g02769 1215 CDD SF2_C_SNF 734 859 - -
Mepo4g02769 1215 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 739 898 IPR001650 -
Mepo4g02769 1215 PANTHER SNF2/RAD54 FAMILY MEMBER 146 1197 - -
Mepo4g02769 1215 Gene3D - 360 651 IPR038718 -
Mepo4g02769 1215 MobiDBLite consensus disorder prediction 1063 1092 - -
Mepo4g02769 1215 Gene3D - 658 948 IPR027417 -
Mepo4g02769 1215 SMART ultradead3 387 619 IPR014001 -
Mepo4g02769 1215 MobiDBLite consensus disorder prediction 480 506 - -
Mepo4g02769 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 908 IPR027417 -
Mepo4g02769 1215 FunFam DNA excision repair protein ERCC-6 659 937 - -
Mepo4g02769 1215 Pfam SNF2-related domain 394 716 IPR000330 GO:0005524|GO:0140658
Mepo4g02769 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 652 IPR027417 -
Mepo4g02769 1215 MobiDBLite consensus disorder prediction 231 251 - -
Mepo4g02769 1215 CDD DEXHc_ERCC6 391 601 - -
Mepo4g02769 1215 MobiDBLite consensus disorder prediction 87 110 - -
Mepo4g02769 1215 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 403 602 IPR014001 -
Mepo4g02769 1215 FunFam Protein CHROMATIN REMODELING 8 369 651 - -
Mepo4g02769 1215 Coils Coil 1004 1031 - -
Mepo4g02769 1215 SMART helicmild6 765 848 IPR001650 -
Mepo4g02769 1215 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02769 Mepo-Chr4 36376085 36382573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02769 691 901 RAD5 or RAD16-like Gene Family AT5G22750 31.308 4.06e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo4g02769 SNF2_N 8.8e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02769 K10841 - gmx:100820025 1864.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02769 4 36376085 36382573 Mepo4g02769 4 36376085 36382573 ECH