Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02698 ATGAATTACCATGTTCCAGATTTCGATATTCAAATGGATGATGAAGAAGAATACCCTATCCATCATTCAAAGAAACCTTTCACGCAACAGGACGATGAGATCATGGAACTATTATGGCAAAACGGACAAGTTGTGATGCAAAGCCAAAACCACCGCCAATTTAGAAAACCGCCGGCACCGGCAACCACAACAACCGCCAGTCGCGTGATTCCTGATCATAGAGAGATTCGATCAACCGATGCAGATAACTACATGAATCAACACTTGTTCATGCAAGAAGATGAAATGGCTTCGTGGCTTTTTGATTCAATGAATGAAGTTGAAGATCCTCCATTCAACCGTCACGATTTCAGTTCAGAAACACTTTTTCATTCATCCGCCGGAAGTGCTGGTCAGAAACACGGCAGCGGTGGTGGCGGTGTTATACAAGCACAAGCCACTGTTCGTGAGTCGGAGTTTGTTCGGCAATCAAGACCGGCAGTGGTGGCGGCTTCTCGGCCTCCGATTCATCCGGCGAGGAAACCGGAGATGGTGGTGAATAGAACGCAGAATTTTGCACATTTTACGAATACGAACCAGAGGAATGCCAGAAGTGAACCAGGTGCATCTTCGAGTTCGATGATTGCGGCGGGAAGAGAATCGACGGTGGTAGATTCATGTGACACGCCGGTCATGACAGCGAAGACATACGCAGCTTCGAGATTATCGGAAACGATCAGAAGCGCGACGGCGGAGACTGGATGTGTGAGTGTGAGCACCACCGGAAAAGCGGCGACGACGTTGGATATGACAGTTACTTCCTCGCCTGGATGTTCTAGCGGGAGTGCTGAACCGGTTCATAGAGAACCGGAGTTGGACCGGAAAAGGAAGGGACGTGAACCGGCAGAATCTGAGTTTCTGAGCGAGGATGTCGATTTTGAATGCCAGGAAGAAAAAAAAAAACACCGTGGATCTACATCTGCAAAGAGATCCCGTGCTGCAGAGGTTCATAATCTCTCAGAGAGGAAGCGTCGAGATAGAATTAACGAAAAGATGAAAGCTTTGCAAGAACTTATACCGCGGTGCAACAAGTCCGACAAAGCTTCAATGTTGGATGAAGCAATCGAATACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGATACCTATGATGTTTCCTGGAATTCAGCAATTTATGCCGGCGATGGGAATGGGAATGGGAATGGGTTTAGGGATGGAAATGGGAATGGGAATGAACAGAGCAGTGATGCCATTTCCTAATATGTTGCCTAATTCTCCTTTGCCAACAGCAGCAACTGTAGCTGGTCCTTTTGGACCAAGGTTCGCTATGCCTCCTTTCCATATGCCCCATGTTCCTGCAGCTGCACCTGATTCATCCAGAATGCAAGCAGAAAATCAATCAGACAACCCCCTTAACTCCCTTGGTGCTCTGCCTCCAGATCAATCACGCATTCCAAACCCAAACTTTGCAGATCCTTACCAGCAATACCTCGGTCCCCACCAGGTGCAGCAATTAATGCAGGCAATGAACCAGCAAAATGTCAACAGACCAGGTACCAGTGGGAGCCAAGAAAATCCAGAAAACAATTAG 1611 0.4749 MNYHVPDFDIQMDDEEEYPIHHSKKPFTQQDDEIMELLWQNGQVVMQSQNHRQFRKPPAPATTTTASRVIPDHREIRSTDADNYMNQHLFMQEDEMASWLFDSMNEVEDPPFNRHDFSSETLFHSSAGSAGQKHGSGGGGVIQAQATVRESEFVRQSRPAVVAASRPPIHPARKPEMVVNRTQNFAHFTNTNQRNARSEPGASSSSMIAAGRESTVVDSCDTPVMTAKTYAASRLSETIRSATAETGCVSVSTTGKAATTLDMTVTSSPGCSSGSAEPVHREPELDRKRKGREPAESEFLSEDVDFECQEEKKKHRGSTSAKRSRAAEVHNLSERKRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMIPMMFPGIQQFMPAMGMGMGMGLGMEMGMGMNRAVMPFPNMLPNSPLPTAATVAGPFGPRFAMPPFHMPHVPAAAPDSSRMQAENQSDNPLNSLGALPPDQSRIPNPNFADPYQQYLGPHQVQQLMQAMNQQNVNRPGTSGSQENPENN 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02698 536 PANTHER TRANSCRIPTION FACTOR PIF3 21 518 IPR044273 GO:0003700|GO:0006355
Mepo4g02698 536 MobiDBLite consensus disorder prediction 457 536 - -
Mepo4g02698 536 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 391 IPR036638 GO:0046983
Mepo4g02698 536 CDD bHLH_AtPIF_like 325 388 IPR047265 -
Mepo4g02698 536 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 374 IPR011598 GO:0046983
Mepo4g02698 536 Coils Coil 331 351 - -
Mepo4g02698 536 MobiDBLite consensus disorder prediction 279 299 - -
Mepo4g02698 536 SMART finulus 331 380 IPR011598 GO:0046983
Mepo4g02698 536 MobiDBLite consensus disorder prediction 466 483 - -
Mepo4g02698 536 MobiDBLite consensus disorder prediction 306 335 - -
Mepo4g02698 536 MobiDBLite consensus disorder prediction 504 536 - -
Mepo4g02698 536 FunFam Basic helix-loop-helix transcription factor 320 383 - -
Mepo4g02698 536 MobiDBLite consensus disorder prediction 264 335 - -
Mepo4g02698 536 Gene3D - 320 383 IPR036638 GO:0046983
Mepo4g02698 536 Pfam Helix-loop-helix DNA-binding domain 329 375 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02698 Mepo-Chr4 35697371 35704722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02698 1 380 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 38.539 5.74e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo4g02698 HLH 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02698 - - tpra:123904923 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02698 4 35697371 35704722 Mepo4g02698 4 35697371 35704722 ECH
Mepo3g03221 3 42354489 42358803 Mepo4g02698 4 35697371 35704722 PCT