LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo4g02687	ATGGCGGCGTCACGGCGGCTCCGGGACCTTCAATCTCAACCGGGAAACAAGATCTGCGTCGATTGCTCTCAGAAGAATCCACAGTGGGCATCAGTCTCCTACGGCATCTTCATGTGCTTAGAATGCTCCGGTAAACACCGTGGTCTCGGCGTTCACATCTCCTTCGTCCGATCCGTCACCATGGATGCTTGGTCCGAAATCCAAATCAAGAAAATGGAAGCTGGTGGTAATGACAATCTCAACGCTTTCCTTGCAAAGTATTCAATTCCGAAGGAAACGGATATTGTTACCAAGTATAACACCAACGCTGCTTCGGTTTATCGTGATCGGATTCAGGCTTTGTCGGAAGGTCGGTCGTGGCGTGATCCGCCGGTTGTTAAGGAGAATTTAGGTTCGAAGGGAAGGCCGCCGATGGGGCAGAGTCGCCGGAGTAATGATTCAGGTTGGGATGATTGGGATAGGGAAGGAGCTTCGGGTGGTGATGTGAGGAGTAAGTCGACGGGGGATTTTAGGAATTTGAACGGCGGTGGTGCACCGGCGAGATCGAGGTCGACGGAGGATATTTATACACGGTCGCAATTGGAAGCTTCTGCGGCGGGTAAAGAGGGATTTTTTGCGAAGAAGATGGCGGAGAATGAGTCGAGGCCGGAAGGACTTCCACCGTCGCAAGGTGGGAAGTATGTTGGGTTTGGATCTAGTCCGATGCCTTCGCAGAGGAGTAATCCGCAGCAAAATGATTATTTTTCTGTTGTTTCACAGGGGATTGGTAAGTTGTCATTGGTTGCTGCATCTGCTGCTAATGCTGTTCAGACTGGCACAAAAGAGATTACTTCTAAGGTCAAGGAAGGCGGTTATGATCAAAAGGTCAACGAAACTGTCACTGTTGTCACTCAAAAGACATCAGAGATTGGTCAAAGGACATGGGGTTTAATGAAAGGGGTTATGGCTTTGGCTTCACAAAAGGTTGAGGAGTACACTAAAGAAAACTCAAATTCGACTACTAATAACTGGCAACGAAATGAGAATGATAGAAATGGCTACTATCAGGATTTCAATCAAGGGAACAAAGGAGGTAATTCTTCTACTGGAAGAGAACAATCTTCATCAGGGCAATACAAAACTCAAAGCTCAAACTCTTGGGACGATTGGGGCCAAAAAGATAGTTGGAAGGGAGAACCTACTAATAAAGGATCAACTCCTTATTCATCTGGTGGGCAGTCTGGTACTCACAATCCCAGCTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAAGAACCAGCTAAAGCATCGGCTCCCCACAATAATGATGCTGGTTGGGCTGGCTGGGATAATGCAAAAGATGATGGATTTGATAACTTTTATGAAGGTGCATCTAATAAGAAAGCTGCTGGACATAATGGGAAATCAGATGACGCTTGGACAGGGGGTGGCTTTCTCTAA	1446	0.4716	MAASRRLRDLQSQPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQIKKMEAGGNDNLNAFLAKYSIPKETDIVTKYNTNAASVYRDRIQALSEGRSWRDPPVVKENLGSKGRPPMGQSRRSNDSGWDDWDREGASGGDVRSKSTGDFRNLNGGGAPARSRSTEDIYTRSQLEASAAGKEGFFAKKMAENESRPEGLPPSQGGKYVGFGSSPMPSQRSNPQQNDYFSVVSQGIGKLSLVAASAANAVQTGTKEITSKVKEGGYDQKVNETVTVVTQKTSEIGQRTWGLMKGVMALASQKVEEYTKENSNSTTNNWQRNENDRNGYYQDFNQGNKGGNSSTGREQSSSGQYKTQSSNSWDDWGQKDSWKGEPTNKGSTPYSSGGQSGTHNPSSWDDWDHKDSRKEEPAKASAPHNNDAGWAGWDNAKDDGFDNFYEGASNKKAAGHNGKSDDAWTGGGFL	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo4g02687	481	MobiDBLite	consensus disorder prediction	146	160	-	-
	Mepo4g02687	481	MobiDBLite	consensus disorder prediction	414	432	-	-
	Mepo4g02687	481	Gene3D	Arf GTPase activating protein	1	128	IPR038508	-
	Mepo4g02687	481	MobiDBLite	consensus disorder prediction	324	481	-	-
	Mepo4g02687	481	SUPERFAMILY	ArfGap/RecO-like zinc finger	5	111	IPR037278	-
	Mepo4g02687	481	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED	1	394	IPR044519	GO:0005096\|GO:0016192
	Mepo4g02687	481	MobiDBLite	consensus disorder prediction	211	243	-	-
	Mepo4g02687	481	SMART	arf_gap_3	1	120	IPR001164	GO:0005096
	Mepo4g02687	481	PRINTS	HIV Rev interacting protein signature	16	35	IPR001164	GO:0005096
	Mepo4g02687	481	PRINTS	HIV Rev interacting protein signature	35	52	IPR001164	GO:0005096
	Mepo4g02687	481	PRINTS	HIV Rev interacting protein signature	56	77	IPR001164	GO:0005096
	Mepo4g02687	481	MobiDBLite	consensus disorder prediction	324	384	-	-
	Mepo4g02687	481	MobiDBLite	consensus disorder prediction	118	187	-	-
	Mepo4g02687	481	CDD	ArfGap_ArfGap1	3	117	-	-
	Mepo4g02687	481	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	4	120	IPR001164	GO:0005096
	Mepo4g02687	481	FunFam	ADP-ribosylation factor GTPase-activating protein	1	129	-	-
	Mepo4g02687	481	Pfam	Putative GTPase activating protein for Arf	5	109	IPR001164	GO:0005096
	Mepo4g02687	481	MobiDBLite	consensus disorder prediction	391	413	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo4g02687	Mepo-Chr4	35566977	35570516	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo4g02687	5	87	C2H2 Transcription Factor Family	AT4G05330	48.810	7.34e-23	97.4

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo4g02687	4	35566977	35570516	Mepo4g02687	4	35566977	35570516	ECH
	Mepo3g03232	3	42497125	42501400	Mepo4g02687	4	35566977	35570516	PCT