Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02684 ATGAAGAAAAGCCCAAAACAAGAAAAGCCCAATGGGGTTTATAATAAAATACCGGTGCTGAAACGATTAACATCCCCTTCTTCTTCTCTTCGAAAATCTACCTGTATCCCGGCGGCGAGGCAGAGAACCGGCAGTAAGATGGTTAAAGTTGCTTTCTACCGGAACTATGGGAAAACATTCAAGAAGCCGCGTCGTCCATACGAGAAGGAGCGTTTGGATGCTGAGTTGAAGCTGGTCGGAGAATACGGTCTTCGGTGCAAGAGGGAGCTTTGGAGAGTTCAATATGCTCTGAGCCGTATCCGTAACAATGCAAGGAATCTGTTGACACTGGATGAGAAGAACCCTCGTCGTATCTTTGAGGGTGAAGCGCTCTTAAGAAGGATGTTTAAGCATGGTCTACTTGATGAAACTCAGAACAAACTCGATTATGTCTTGGCTCTCACTGTTGAGAATTTTCTTGAACGCCGTCTTCAGACACTTGTATTCAAATCTGGTATGGCCAAGTCCATTCATCATGCTCGTGTTCTTATCAGGCAGAGACACATCAGGGTTGGGAGGCAGGTTGTGAACATCCCATCATTCATGGTGAGGGTTGATTCACAGAAGCACATTGACTTTTCACTCACAAGTCCTTTTGGTGGTGGTCTTCCTGGTCGCGTCAAGCGAAAGAACCTTAAGGCTGCAGCCAAGAAGGCTTCTGGAGGTGATGGTGATGAGGAAGATGAAGATTAA 732 0.4604 MKKSPKQEKPNGVYNKIPVLKRLTSPSSSLRKSTCIPAARQRTGSKMVKVAFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKNLKAAAKKASGGDGDEEDED 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02684 243 FunFam 40S ribosomal protein S9 154 235 - -
Mepo4g02684 243 PANTHER 30S 40S RIBOSOMAL PROTEIN 55 229 IPR022801 GO:0003735|GO:0015935|GO:0019843
Mepo4g02684 243 Pfam Ribosomal protein S4/S9 N-terminal domain 54 154 IPR001912 GO:0019843
Mepo4g02684 243 SMART Ribosomal_S4_2 54 154 IPR001912 GO:0019843
Mepo4g02684 243 ProSitePatterns Ribosomal protein S4 signature. 153 177 IPR018079 GO:0019843
Mepo4g02684 243 Gene3D - 154 210 IPR036986 GO:0003723
Mepo4g02684 243 Pfam S4 domain 155 198 IPR002942 GO:0003723
Mepo4g02684 243 CDD S4 155 199 - -
Mepo4g02684 243 SMART s4_6 155 226 IPR002942 GO:0003723
Mepo4g02684 243 SUPERFAMILY Alpha-L RNA-binding motif 58 205 - -
Mepo4g02684 243 ProSiteProfiles S4 RNA-binding domain profile. 155 229 - -
Mepo4g02684 243 NCBIfam 30S ribosomal protein S4 57 212 IPR005710 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02684 Mepo-Chr4 35540057 35542244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02684 47 233 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.909 8.93e-125 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02684 K02997 - gmx:100807649 342.043