Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02679 ATGGGAGAAGAAGCGGTTTGTGTGCAAGAATTGGTTGATGGAAAGACGGAAAATACCGAGGAATCAAGGTTGGAATTGAAACGTGATTATAACCAGTGTGTTGCTGATACTGAAGCAAATGTTCTGCCGAATAAAAAACAAGCTAAAGAAGTTTCAAACGAAGAATTGCGTTCGGAAGTTACAAATCCAAATGTTTCTGCAACAGAACATGCACAAACCTTTCACGATATCAGTAGCCAACCGACAGAATCTGAGAATGTTAGCCATGCAGAGTGTGGGGAACTAACGTCTACTGGTTTGGAGAATTCTAGTTCTCATGATACCGTGAGTGATGAAGCTGGTGTTCGGAATAATGATAATGATAATATTAATAATTTGTGTCAGAATGATAAAGGTATGAGTAGTAACGATGCAGTGTCCCGTGTTGTGATGGAAATCCCAAAGCATGCTAGTTCAACCGGTATTCGGAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGTTTATGATGATTACCAAACACCTACTGGCTATACCGATGGCAGTGGCAGTGACTATGGATATGGCTATGGGAATGGCAGTGGATATGGCTATGGATATGGTTATCACGGGGATGATGAATATTTGGCAAATGATGATTATAATAGTGGGTTGGTAGAGAGCTCGTATGGCAGGGGATATGTTCCTTATGAAGATTCGGAGTTATATTCTGGCAATATGGAATTGAAAATGTCAAAGAAAGTAGTTCCAAACGCCTTCCCCAATAATGTGAAAAAACTATTATCAACCGGTATCCTTGATGGAGCTGCAGTGAAATATATTTACAACCCTGGAAAGGCTGAGCTCGATGGGATTATTGGTGATGGTGGATATCTGTGTGGCTGTTCAATGTGCAGTTACTCTAGAGTGCTCAGTGCCTATGAGTTTGAGCAGCATGCTGGTGCTAAGACTAGACATCCAAATAATCACATATTCCTAGAAAATGGAAAACCAATTTATAGCATTATACATGAAATAAAAACTGCCACAAACAGCACGCCAGACGAGGTTATAAAGAATGTGGCCGGTTCATCTATCAACGAGGGATCCTTCCAGGTTTGGAAAGAAAGTCTCCTACAAAGCAACAAGAAGGTTCCAGCTCAAAAAAAATACAGCACAAAGTATACTGGCATGCCTCATACATACCACAGTCAATCTATAGAAAGTGCGAGCTCCTTCTCGTCTTCGCGTGTGCGAAATCATTTTGAGCAGCAAATGTATGTGAACCAGACAGCTGATGAGTGGAAACGTGTCGTAAAGAAACCAAGCACCTACACTTACTACTCAGGTATACCGCAGAAGAGAAGTGCTGATGGTTGCACTAAGAAAAGGGACAACGATTTGCACAGGTTACTTTTTATGCCTAATGGCCTACCTGATGGTGCCGAGTTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAAGGAAATGGTATAGTCTGTGGTTGTTGTGATATAGAGATAAGCCCTTCGCAGTTTGAAGCCCATGCTGGAATGGCAGCTAGACGTCAACCTTACCGCCACATATATGCTTCCAATGGATTGACACTTCATGATATAGCTCTCTCTTTAGCAAATGGTCAAAACCTTACTACGGGAGATAGTGATGATATGTGTGCAGTATGTGGAGACGGAGGAGATTTGATTCTTTGCAATGGATGTCCTAGGGCTTTTCATGCAGCCTGCTTGGGTTTACACAGTGTACCAGAGAGTGGTTGGCATTGTCTAAATTGTGAAGATAATACTGGTGATGAAAGAGGTGCAAGGCCAATTATGATACGGTTGACACGGGTTGATAAAGAACCAGAATACGAAGTGGGTGGATGCGTTGTTTGCAGGGCAAATGATTTCAGTGTAGATAAATTTGATGACCGAACAGTAATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGACATTGGGCTATGTGAGTTGGAAGAGCTTCCCAAGGATAAGTGGTTTTGTTGCGACGACTGCAATCGAATATATGTGGCTCTGCAGAACTCAGTTTCTGCTGGAGCAGATACCATACCATCTTCCTTGTCGGAACTAATAATCAGGAAGCATGAGGACAGGGGATTATGTACGTATGGAGACATGAATGATATCCAATGGAGAATTTTAAGTGGAAAAAGTCGTTATGCAGAGCATTTACCGTTACTTTCACGAGCTGCTGCAATTTTTCGAGAGTGCTTTGATCCCATCGTTGCAATATCTGGTCGTGACCTGATTCCTGTTATGGTATATGGGCGTAATATTTCTGGCCAAGAATTCGGGGGAATGTATTGCATCGTTTTAATTGTGAATTCTATTGTAGTATCTGCCGGGCTTCTTAGGATTTTTGGCCGCAATATTGCTGAGCTTCCCCTGGTTGCTACAAGTAGAGAGCATCAAGGAAAAGGTTATTTTCAAGCGCTGTTCTCTTGCATAGAGAGGTTGTTGTCTTCTCTAAATGTAGAAAAGCTGGTGCTCCCTGCTGCAGGGGATGCAGAGTCCATTTGGACTAAGAAATTAGGCTTTCACAAGATGAGTGAAGATCAGTTAACCAAACATCTTAAAGAGGTGCAGCTCACCCTCTTCAACAAAACATCAGTGCTGGAAAAGATGGTGCAGGCGACAGAATGA 2691 0.4199 MGEEAVCVQELVDGKTENTEESRLELKRDYNQCVADTEANVLPNKKQAKEVSNEELRSEVTNPNVSATEHAQTFHDISSQPTESENVSHAECGELTSTGLENSSSHDTVSDEAGVRNNDNDNINNLCQNDKGMSSNDAVSRVVMEIPKHASSTGIRKITFKFSKKKEVYDDYQTPTGYTDGSGSDYGYGYGNGSGYGYGYGYHGDDEYLANDDYNSGLVESSYGRGYVPYEDSELYSGNMELKMSKKVVPNAFPNNVKKLLSTGILDGAAVKYIYNPGKAELDGIIGDGGYLCGCSMCSYSRVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIHEIKTATNSTPDEVIKNVAGSSINEGSFQVWKESLLQSNKKVPAQKKYSTKYTGMPHTYHSQSIESASSFSSSRVRNHFEQQMYVNQTADEWKRVVKKPSTYTYYSGIPQKRSADGCTKKRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYASNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLHSVPESGWHCLNCEDNTGDERGARPIMIRLTRVDKEPEYEVGGCVVCRANDFSVDKFDDRTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGADTIPSSLSELIIRKHEDRGLCTYGDMNDIQWRILSGKSRYAEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSIVVSAGLLRIFGRNIAELPLVATSREHQGKGYFQALFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFHKMSEDQLTKHLKEVQLTLFNKTSVLEKMVQATE 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02679 896 SMART PHD_3 625 682 IPR001965 -
Mepo4g02679 896 SMART PHD_3 555 596 IPR001965 -
Mepo4g02679 896 Pfam PHD-finger 555 596 IPR019787 -
Mepo4g02679 896 CDD PHD1_AIRE 555 595 - -
Mepo4g02679 896 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 732 884 IPR000182 GO:0016747
Mepo4g02679 896 ProSitePatterns Zinc finger PHD-type signature. 556 595 IPR019786 -
Mepo4g02679 896 CDD NAT_SF 785 846 - -
Mepo4g02679 896 MobiDBLite consensus disorder prediction 97 120 - -
Mepo4g02679 896 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 776 869 IPR016181 -
Mepo4g02679 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 684 IPR013083 -
Mepo4g02679 896 PANTHER AUTOIMMUNE REGULATOR 17 891 - -
Mepo4g02679 896 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 543 618 - -
Mepo4g02679 896 ProSitePatterns Zinc finger PHD-type signature. 626 681 IPR019786 -
Mepo4g02679 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 548 605 IPR013083 -
Mepo4g02679 896 SUPERFAMILY FYVE/PHD zinc finger 621 679 IPR011011 -
Mepo4g02679 896 Gene3D - 773 880 - -
Mepo4g02679 896 FunFam PHD zinc finger protein 773 880 - -
Mepo4g02679 896 SUPERFAMILY FYVE/PHD zinc finger 551 597 IPR011011 -
Mepo4g02679 896 ProSiteProfiles Zinc finger PHD-type profile. 553 598 IPR019787 -
Mepo4g02679 896 FunFam PHD zinc finger protein 624 684 - -
Mepo4g02679 896 Pfam Tify domain binding domain 489 538 IPR032308 -
Mepo4g02679 896 Pfam Tify domain binding domain 284 335 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02679 Mepo-Chr4 35494342 35504435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02679 1 892 PHD Transcription Factor Family AT3G53680 51.036 0.0 873
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo4g02679 TDBD 4.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02679 - - tpra:123904992 1531.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02679 4 35494342 35504435 Mepo4g02679 4 35494342 35504435 ECH