Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02666 ATGAAAAGGAAGAGAGACGAAAGGGTGGAGAACATAGATTTGGCAAATTGTCTAATTCTACTCTCTCATCCCAAAGAAACCAAACCAAAGAAACATTTTAGTCCTGTGGAATTTGAGTGCACCACATGCAACCGCAAGTTCTCTTCGTTTCAAGCCCTAGGTGGTCATAGGGCTAGTCACAAAAAGCCCAAACTAGATACCGTGAAACTCAAGCTACATGCTCAAACTTTAGATTTGTTGAATAACCCCAAAACGCATGGGTGCTACATTTGTGGTAAACAATTTTCTCTTGGCCAGGCTTTGGGAGGACATATGAGAAGGCACAAAATTGGCGTCAACAACGAGGGATTTTCTTTGGTGAAGAAAAATAAGGTTGTTGGAAAAATCCCAATATTGAAAAGATCGAATAGTAAGAGGATTATGTGCTTGGACTTGAACTTAACACCTTTGCAGAATGACTTGAAATTATTGTTCGGAAATGTGGCACCTAAAGTTGATTCATTTTTTTGA 510 0.3922 MKRKRDERVENIDLANCLILLSHPKETKPKKHFSPVEFECTTCNRKFSSFQALGGHRASHKKPKLDTVKLKLHAQTLDLLNNPKTHGCYICGKQFSLGQALGGHMRRHKIGVNNEGFSLVKKNKVVGKIPILKRSNSKRIMCLDLNLTPLQNDLKLLFGNVAPKVDSFF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02666 169 SMART c2h2final6 86 108 IPR013087 -
Mepo4g02666 169 SMART c2h2final6 38 60 IPR013087 -
Mepo4g02666 169 PANTHER ZINC FINGER PROTEIN ZAT5 7 153 - -
Mepo4g02666 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Mepo4g02666 169 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Mepo4g02666 169 Pfam C2H2-type zinc finger 86 109 - -
Mepo4g02666 169 Pfam C2H2-type zinc finger 38 63 - -
Mepo4g02666 169 SUPERFAMILY beta-beta-alpha zinc fingers 38 108 IPR036236 -
Mepo4g02666 169 Gene3D Classic Zinc Finger 35 108 - -
Mepo4g02666 169 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Mepo4g02666 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02666 Mepo-Chr4 35317502 35318011 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02666 1 169 C2H2 Transcription Factor Family AT2G37430 45.556 5.69e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g02666 zf-C2H2_6 4.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02666 - - aprc:113870747 237.654