Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02600 ATGGGATCCCCAATAGCCGGAGACAAGAGCTCCTCTCAGTCAGTGTTTTGGCAGCAAAACAATTCAAGTAACAATCTTTTTGCTCCTAAGCCATCTGGTTGTCCAACTCTATTTGGATCGGAAACAGGTAATTCCATGTCTGGGGGTACTTCCACAGGTGTATTTGGAGCAGCTCAAACACCGTATCCCGTCTCTTCCAATACTAATTTTGGCGCTTTGTCTTCAACTCCTGCCCTTGATTTTGGTCAGTTGTCGAGCCCGTCTGGCTCCTCTCAGTCGATGTTTGGGCAGCAAAACACTTCAAGTAACAATCTTTTTGTTGCTAAATCATTTGGCAGTCCAACTCCATTTGGATCGGAAACAGGTAATTCCATGTCTAGGGGTACAGCCACGGGTGTATTTGGCACAGCTCAAACACTGTCTCCCTTCTCTTCCAATACTGATTTCGGCGCTTCGTCTTCAACTTCAGCTTTTGGATCATCACTCTTTGGTCAGGAGCCTGCTTTTGGAGGTTTTGGCTCTACTCCTACTCAAACAAGTCCATGTAGAAGTGCCATCCAACCATCACGACCAGCATTTGGAAGTAACGCTGGTCGTGCTTCACTGCATGGTTCTTTGAATATACGTGATCAACATAGGGACATGCAGATGGACATAAGCAGCATGAGCTATGAGGAACTACTTGCACTTGGAGAGAGGATCGGCTATGTGAATACAGGATTATCTGAGAGTTTGATTTCTAAGTATTTGACAAAAACACTGGACTCTTCAGCTGAGCAAAGTCAAGAAGGAACTTGTGCAATTTGTCTGGAAGAATACAAGAACATGGACAGTATTGGGACATTGGAAACTTGTGGACATGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCTATGAAGAACTTGTGTCCCATATGCAAAGTTTCTGCTTTGCCTGATGAGTGA 948 0.4451 MGSPIAGDKSSSQSVFWQQNNSSNNLFAPKPSGCPTLFGSETGNSMSGGTSTGVFGAAQTPYPVSSNTNFGALSSTPALDFGQLSSPSGSSQSMFGQQNTSSNNLFVAKSFGSPTPFGSETGNSMSRGTATGVFGTAQTLSPFSSNTDFGASSSTSAFGSSLFGQEPAFGGFGSTPTQTSPCRSAIQPSRPAFGSNAGRASLHGSLNIRDQHRDMQMDISSMSYEELLALGERIGYVNTGLSESLISKYLTKTLDSSAEQSQEGTCAICLEEYKNMDSIGTLETCGHDYHVSCIRKWLSMKNLCPICKVSALPDE 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02600 315 ProSiteProfiles Zinc finger RING-type profile. 266 308 IPR001841 -
Mepo4g02600 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 312 IPR013083 -
Mepo4g02600 315 MobiDBLite consensus disorder prediction 169 197 - -
Mepo4g02600 315 SMART ring_2 266 307 IPR001841 -
Mepo4g02600 315 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 232 312 - -
Mepo4g02600 315 MobiDBLite consensus disorder prediction 1 32 - -
Mepo4g02600 315 SUPERFAMILY RING/U-box 256 311 - -
Mepo4g02600 315 MobiDBLite consensus disorder prediction 171 191 - -
Mepo4g02600 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 18 312 IPR045191 GO:0061630
Mepo4g02600 315 MobiDBLite consensus disorder prediction 1 30 - -
Mepo4g02600 315 CDD RING-H2_RNF24-like 264 311 - -
Mepo4g02600 315 Pfam Ring finger domain 265 308 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02600 Mepo-Chr4 34600590 34602654 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02600 202 314 C3H Transcription Factor Family AT2G37150 61.404 5.07e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02600 - - mtr:11431193 196.438