Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02597 ATGCAAATGATTCCTGGTGACCCTTTTTCACTATCCACTTCACTTGGAGCGTTTAGTACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATGCTCCTTCTGTCCCCAAGAAGAAGAGAAATCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCGCCAAAGACACTCATGGCAACAAACAGATTCATCTGTGAAATATGCAACAAAGGGTTCCAAAGAGATCAAAACCTTCAACTTCATAGAAGAGGACACAACCTTCCATGGAAGCTTAGACAGAGATCCAACAAAGATGTTATTAAGAAGAAAGTTTACATCTGTCCAGAGAAGACTTGTGTCCACCATGACCCTTCAAGAGCACTTGGTGATCTCACAGGTATAAAAAAGCACTTTAGTAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCCAAAAAATATGCAGTCCAATCTGATTGGAAAGCTCATACAAAAACATGTGGTACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCAAGAAAGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCATTGGCAGAAGAGAGTGCAAGAGTAACTTCAGTTACAACAACAAATCTAAATTTTAAGAATGAAGAAGGTAGTGCTATGATGAATCCACATTCACATTCACAACATGGTTTATCACATGGAATACTTCAAAATATTGGTGGAATTCAACATCCACAATTTGGCTCACATGGATTTCACCATGTAGATTTCAATGGAATTGGAAACAATAACAACTCTATGATTATGGAGCAACAAAGGCCAAGTTTATCACTTTGGTTAAACCAAGGGAATCATGAAATGGGACAAAATTCTAATTCCCTTTTTGGTTCTTCTGGTTTATCTGAGATAGTTCAAATGGGAAATGCTACTACGACTAATAATAATAATAATGCCTTGATTTGTTCTTCTTCATCATCAATGTTTGGTGTACCTGCTTCAAATTCAACATCTGCTGCAAATCTTTCTCTATCAAAGCCTGCTTCTTCCGGTTCTGTTACTGTTTCTGCTACACCAATGTCAGCTACTGCTCTTCTGCAAAAAGCAGCTCAGATGGGTTCAACTAGAAGCAATACTAGTAATGATAATAACAACCCTTCCATTTTTAGTTCTAGTTTTGGTGTAATGACATCACCTTCTTCTTCTACTAGTTCAGCTATGTTGGGAAATAGTAGTGCAGGTGCAGCTGCTAATGCTAGTTATAGCTCAAATAGTAGTTTTGATCAGTTTTTTATGCATGGACCACAAAGTGATCAACAAGGAAAATTGAATATTATGCACCATGGTGGTTCTGGTTCTGGTTCAAACTCTATGGATCAAGTACAACATAGTAATTTGACAAGAGATTTTCTTGGTGTAAGTGGTGGTGGAAGAACTGGTCCACCTCAGTTTCTACCTCAAGAGATAGCAAAATTTGCTTCTTCCATTCAATTCACAGGTAATCAGTGA 1506 0.3838 MQMIPGDPFSLSTSLGAFSTQEQNTNPNPKPNAPSVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARVTSVTTTNLNFKNEEGSAMMNPHSHSQHGLSHGILQNIGGIQHPQFGSHGFHHVDFNGIGNNNNSMIMEQQRPSLSLWLNQGNHEMGQNSNSLFGSSGLSEIVQMGNATTTNNNNNALICSSSSSMFGVPASNSTSAANLSLSKPASSGSVTVSATPMSATALLQKAAQMGSTRSNTSNDNNNPSIFSSSFGVMTSPSSSTSSAMLGNSSAGAAANASYSSNSSFDQFFMHGPQSDQQGKLNIMHHGGSGSGSNSMDQVQHSNLTRDFLGVSGGGRTGPPQFLPQEIAKFASSIQFTGNQ 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02597 501 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Mepo4g02597 501 MobiDBLite consensus disorder prediction 1 29 - -
Mepo4g02597 501 MobiDBLite consensus disorder prediction 1 51 - -
Mepo4g02597 501 Gene3D Classic Zinc Finger 45 120 - -
Mepo4g02597 501 Gene3D Classic Zinc Finger 122 202 - -
Mepo4g02597 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Mepo4g02597 501 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Mepo4g02597 501 FunFam protein indeterminate-domain 12-like 46 115 - -
Mepo4g02597 501 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 481 IPR031140 -
Mepo4g02597 501 SMART c2h2final6 144 164 IPR013087 -
Mepo4g02597 501 SMART c2h2final6 109 139 IPR013087 -
Mepo4g02597 501 SMART c2h2final6 67 89 IPR013087 -
Mepo4g02597 501 MobiDBLite consensus disorder prediction 366 385 - -
Mepo4g02597 501 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Mepo4g02597 501 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02597 Mepo-Chr4 34567580 34570640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02597 1 492 IDZ Gene Family AT5G03150 47.794 3.67e-141 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g02597 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02597 K25870 - gmx:100801182 556.599