Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02596 ATGGCAACCGAAGCTTCCATGAATAATATTAACCAAGGAGCTAGCACCATTGAAAATAGAGATGATATCTCAATTCAAAAGGGTGTGGCATCATCTGAAATAACTGAGGAACTCCCAAGTGGACAACAAAGAACAAGGCAAAATCTTGGTATAGAGACACCAATAAAAACACATGAAGAAACAAAAGAAGATTTTTTGAGAATAAACATACCTCTAACTCCATCACCAAGAAGAGTGATATTTTCCCCTTGTACAAGTCCTGGTTATTTCATTGAAAGCAATGATTCCCCAAGTCCCTCTAGTTCTAAAAATAGATCCACTCTTAAAAAAACTTTTATTCCTAAACTCAGTTTTAAATTTAAGAACACAACTTCTGAGATTGAAAAAGCTGCTTTCCTTGCACTTGAAGGCTCATCCACATTGCCGTCGAAAAAGCCTTTTCTTTCGAGGACATTGTCTCGAATGAAATCGAGAGGGAGGAAAACATCATCCTTGCCTGTATCACCGGTTCCTCGTTCAAATCCAGTGTATGTACATGGAGGGAAAGGTTTTCCAGCAATGGGTAGTGAGAAAGAACTGCAATTACCAATTCATCGTTCCCGGTCTGTTCCTTCCTTTACCGAAGACGATACTCATGTAGGTGGCATGTTTCGTATATTTCGAACCATGCCACAGTTTAATGAGAAAATTACCACCGCAATATCTGTAGCATCTCCAACTGGTGAAAAAGTTGAAACCGAGGATGGAGGGGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGCATGGCTGAATTGGGAGAAGGTGCTGATAATTTTAAATTGGAATGTAGCTGCAAAGGTGAGCTTTCACTAGCACACAAAGAATGTGCAGTTAAATGGTTTGGCATTAAAGGTAATAGGACATGTGATGTGTGCAAGCAAGAAGTTCAGAACTTACCTGTCACTCTTTTAAGACTTCACCAAGCTAATTTACAATTAAGCAGAGGTCACTTAGATGAAACTTCTCAATACAGGGTTTGGCAGGATGCCCCCATTCTTGTCATTGTCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCAGATATGGGATCTAGTGCTATTGCCATGTCCCTTCCCTTTTCTTGTATACTTGGCCTTCTTGCAAGCATGACAGCTACAACCATGGTGAGGAGAAATCATGTTTGGATTTATGGAACCATGCAGTTTTGTTTGGTGGTTCTTTGTGGACATCTTTTCTTCAAATTGACTAAAATGGGAGCTGTTTTGGCAATCCTACTTGCTACATTTGCTGGGTTTGGAGTTGTAATGTGTGGAGCATGTATTCTTATAGAGATCTTGAAATGGAGGAGAAGATGGCTTGCTCAGTTGAACCAACAGAATGGCGGTTCCGAGGATGCGGTTCTGCCCGACCAATCATCTGCAGCCACTCATCAAGTTCAAATTGATTCTCAACATACTGAGAGTAATGTGGGCAACTCTCCTAGGCAAATGAGCTGA 1515 0.4046 MATEASMNNINQGASTIENRDDISIQKGVASSEITEELPSGQQRTRQNLGIETPIKTHEETKEDFLRINIPLTPSPRRVIFSPCTSPGYFIESNDSPSPSSSKNRSTLKKTFIPKLSFKFKNTTSEIEKAAFLALEGSSTLPSKKPFLSRTLSRMKSRGRKTSSLPVSPVPRSNPVYVHGGKGFPAMGSEKELQLPIHRSRSVPSFTEDDTHVGGMFRIFRTMPQFNEKITTAISVASPTGEKVETEDGGEDIPEEEAVCRICMAELGEGADNFKLECSCKGELSLAHKECAVKWFGIKGNRTCDVCKQEVQNLPVTLLRLHQANLQLSRGHLDETSQYRVWQDAPILVIVNMLAYFCFLEQLLVSDMGSSAIAMSLPFSCILGLLASMTATTMVRRNHVWIYGTMQFCLVVLCGHLFFKLTKMGAVLAILLATFAGFGVVMCGACILIEILKWRRRWLAQLNQQNGGSEDAVLPDQSSAATHQVQIDSQHTESNVGNSPRQMS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02596 504 MobiDBLite consensus disorder prediction 1 53 - -
Mepo4g02596 504 MobiDBLite consensus disorder prediction 470 504 - -
Mepo4g02596 504 MobiDBLite consensus disorder prediction 152 172 - -
Mepo4g02596 504 MobiDBLite consensus disorder prediction 1 52 - -
Mepo4g02596 504 SUPERFAMILY RING/U-box 256 311 - -
Mepo4g02596 504 Pfam RING-variant domain 260 307 IPR011016 GO:0008270
Mepo4g02596 504 CDD RING_CH-C4HC3_MARCH 260 308 - -
Mepo4g02596 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 315 IPR013083 -
Mepo4g02596 504 PANTHER OS02G0165000 PROTEIN 21 467 - -
Mepo4g02596 504 ProSiteProfiles Zinc finger RING-CH-type profile. 252 314 IPR011016 GO:0008270
Mepo4g02596 504 SMART ringv_2 259 308 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02596 Mepo-Chr4 34549756 34554517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02596 254 314 C3H Transcription Factor Family AT2G37950 43.750 1.07e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02596 - - tpra:123922782 798.119