Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02594 ATGGGTAATATAGGAAGTAGTGGTTCTAACAATCGTCGGAGACACGGTGGCGGTGGAAGTGGCCGGCGAGTTCATCCACCAGTAACTCCTCCGCCACCGCCGCCACCGGATGGTGCTGGTAACCGATTCGTTTACCCTGCTGGTGCTCCACCGTATCAAAATTATCCTAATTACTATCCTCCGCCTCCGGGAACTGTTCCGATGCCGTTGCCGGCGCCGTATGATCACCATCACCGTCAGGCGATGGACCCAATTTCTTGGAGGTATCAGCAACAGGCGCCGGTGCCGGCGCCGTATGTGGAGCATCAGAAGGCGGTTACTATAAAGAATGATGTTAACATCAAGAAGGAGACACTGGTGATTGAACCTGATGAGGAAAATCCTGGGTTTTTTCTTGTTACGTTTACGTTTGATGCTACTGTTTCTGGAAGCATCACCGTGCTTTTCTTTGCAAAAGAAGGCGACGGCTGCGTCCTTACCTCAACGAAGGAAAATGTTCTTGCACCTGTTACTATAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGAACTGGTATCAATTTTTCAATGTTTGAGGAATGTGAGTTATTGAAAGTGGCCGACATGGACATCTATCCTGTAGCAGTTAAAGCAGACGCATCTTCAAGTGACGCGGATGGATCAAATGAAACACCAACATCTGGAAATAAAACAAACACAAACAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCGGTTAAAGGTAGCTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAACTTCAGTGGAGAGTGACTTGGATGGGAATGACCCTGGAAAAGAGTGTGTTATCTGCTTGTCAGAACCTCGCGACACAACTGTCCTTCCTTGTCGCCACATGTGCATGTGTAGCGGATGTGCGAAGGTTTTAAGGTTCCAAACAAATAGATGTCCAATCTGCAGACAACCAGTTGAAAGGCTTTTGGAGATCAAAGTTGGGCCTGAGCCTGAGCCGGAGGAGTGA 1062 0.4755 MGNIGSSGSNNRRRHGGGGSGRRVHPPVTPPPPPPPDGAGNRFVYPAGAPPYQNYPNYYPPPPGTVPMPLPAPYDHHHRQAMDPISWRYQQQAPVPAPYVEHQKAVTIKNDVNIKKETLVIEPDEENPGFFLVTFTFDATVSGSITVLFFAKEGDGCVLTSTKENVLAPVTINFQQGLGQKFRQPAGTGINFSMFEECELLKVADMDIYPVAVKADASSSDADGSNETPTSGNKTNTNNSQITQAVFEKEKGEFRLKVAKQILWVNGMRYELQEIYGIGTSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEPEE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02594 353 MobiDBLite consensus disorder prediction 25 40 - -
Mepo4g02594 353 MobiDBLite consensus disorder prediction 1 47 - -
Mepo4g02594 353 SUPERFAMILY RING/U-box 294 340 - -
Mepo4g02594 353 CDD mRING-HC-C3HC5_MGRN1-like 293 334 IPR045195 -
Mepo4g02594 353 FunFam probable E3 ubiquitin-protein ligase LOG2 279 344 - -
Mepo4g02594 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 344 IPR013083 -
Mepo4g02594 353 Pfam Zinc finger, C3HC4 type (RING finger) 293 339 - -
Mepo4g02594 353 MobiDBLite consensus disorder prediction 219 240 - -
Mepo4g02594 353 ProSiteProfiles Zinc finger RING-type profile. 295 334 IPR001841 -
Mepo4g02594 353 PANTHER MAHOGUNIN 1 344 IPR045194 GO:0061630
Mepo4g02594 353 MobiDBLite consensus disorder prediction 218 240 - -
Mepo4g02594 353 SMART ring_2 295 333 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02594 Mepo-Chr4 34538609 34542650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02594 96 314 C3H Transcription Factor Family AT3G09770 64.732 1.40e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02594 - - gmx:100789032 497.278