LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo4g02586	ATGACTTTTCAGAAATTTTGCAGTGAAAGTTTTTTGAAGATGAATATATTTATGGATTCAAGAGATAATAATAATACTAACAACTCATCAGAAGAAGTTGAAAAGTGTTTAGATCCTCAGCTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCAACAGTGAACAGTAAAGTTTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGACCTGTTAACTTCATGAATTGTCCAAAGGTTCCACCTTTGATTCCATGCAAAGTTTTATCAATCAAGTACATGGCTGATCCTGAAACAGATGAGGTTTATGCAAAGTTAAAGCTTGTTCCTTTGAGTGGAAATGGAAATGGAAATGGAAATGATGCTGCAGATTATGACACTGTTGGAGGAAATGAAAATCAAGATAAGCCTGTTTCATTTGCAAAGACATTGACTCAATCTGATGCTAACAATGGTGGAGGTTTTTCTGTTCCTAGGTATTGTGCCGAGACGATTTTCCCTCGTTTGGATTACGCGGCCGACCCTCCTCTTCAGAACATTTTGGCTAAAGATGTTCACGGCGAGACGTGGAAGTTTAGGCATATTTATAGAGGGACGCCGAGGCGGCATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTCTTGCCGGGGATTCAATTGTGTTTTTGAGGGCCGAAAATGGTGATCTTTGTGTTGGGATTCGACGAGCGAAGAAGGGTATTGGTGGTGGACACGAGGATCCATTACCATTAGGGTGGAATCCTGTTGGAGAAAATTTTCCTCTTCCTTGGTTTACACAGAATGAGAATCAAATGGGGAGAAACATTAACAACAACAGTAACAATGGTTTAAACTCAGGCGCGGATATGACTGGGAGGGAAAAAGTTAGGCCAGAAGCGGTCCTTCAAGCGGTAACTTTAGCGGCTAATAAGCAACCGTTTGAGGTTATTTACTACCCTCGTGCAAGTACACCAGAGTTTTGTGTGAAGGCGCCTTTAGTAGAGGCGGCAATGCAGATTCGATGGTGTTCTGGAATAAGATTCAAGATGGCCTTTGAAACCGAGGATTCGTCTCGAATAAGTTGGTTTATGGGAATTGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTCTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTTAAATGGGATGAACCAGATTTACTGCAAAATGTGAGAAGGGTGAGTCCGTGGTTGGTTGAATTAGTAGCAAACATTCCATCCATAAACCTTTCACCTTTCTCACAACCAAGGAAGAAATTGAGATTGTCTCCACACCACGATTTCCCCCTCGACGGCCAAATTTCAGTGCCATCGTTTCCTAGTAACCTTCTAGGTCAGAGCAACCTATTCCGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTACGGTCTTCCGATATCGGATCTCCACCTCAGTAAAGTTCAGGCAGGTCTATTTCCGGCTGGTTTCGTGCCTTTTGATCATGCTGCTAAACTACCTAGTGTCTCTAATAACCTAATGATGCAAAAATCTAGCATGAGTGAGAATGTCTCTTGCTTACTATCCATGGCAAGTTCTACTCAGTCTTCGAAGAAATTCGACGATGAGAAGAAACCTCAGCTTGTTCTTTTTGGCCAAAAAATTCTCACCGAGCAACAGATCTCTAATGACCGTTCATCATATGGAAATGCCAATAAAATGGATAATTTTTCTGATGGTTCGGGAACTCCTCGTCATCAACAAGGCTTACAAAAACGCTCCTCTTGCGAGAGTATCCAATGGTATAAGGATAACCGCGAAGAAGCAGAAGCAAGTTTGGAGAGTACGGATCACTGTAAAGTTTTTCTCGAATCAGAAGATGTCGGTCGGACAATTGACCTTTCTTTACTTGGATCTTATGATGAACTGTACAGAAAGCTGGCTGACATGTTTGGCATAGAAAAATATGAGAAGGTAAGTCGCGTGCTCTACCGCGATATATCTGGAGCAGTCAAACACATTGGAGAGGAATCATTCAGTAACTTCACAAGAACAGCAAGGAGGTTGACAATTCTAATGGATTCAAGCAAATAA	2115	0.4227	MTFQKFCSESFLKMNIFMDSRDNNNTNNSSEEVEKCLDPQLWHACAGGMVQMPTVNSKVYYFPQGHAEHACGPVNFMNCPKVPPLIPCKVLSIKYMADPETDEVYAKLKLVPLSGNGNGNGNDAADYDTVGGNENQDKPVSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLLAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPLPLGWNPVGENFPLPWFTQNENQMGRNINNNSNNGLNSGADMTGREKVRPEAVLQAVTLAANKQPFEVIYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRLSPHHDFPLDGQISVPSFPSNLLGQSNLFRCLPESTPAGMQGARHAHYGLPISDLHLSKVQAGLFPAGFVPFDHAAKLPSVSNNLMMQKSSMSENVSCLLSMASSTQSSKKFDDEKKPQLVLFGQKILTEQQISNDRSSYGNANKMDNFSDGSGTPRHQQGLQKRSSCESIQWYKDNREEAEASLESTDHCKVFLESEDVGRTIDLSLLGSYDELYRKLADMFGIEKYEKVSRVLYRDISGAVKHIGEESFSNFTRTARRLTILMDSSK	704

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo4g02586	704	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	34	700	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Mepo4g02586	704	Gene3D	-	140	244	IPR015300	-
	Mepo4g02586	704	CDD	B3_DNA	141	242	IPR003340	GO:0003677
	Mepo4g02586	704	FunFam	Auxin response factor	348	421	-	-
	Mepo4g02586	704	MobiDBLite	consensus disorder prediction	569	597	-	-
	Mepo4g02586	704	SMART	B3_2	142	244	IPR003340	GO:0003677
	Mepo4g02586	704	FunFam	Auxin response factor	140	244	-	-
	Mepo4g02586	704	ProSiteProfiles	B3 DNA-binding domain profile.	142	244	IPR003340	GO:0003677
	Mepo4g02586	704	Pfam	B3 DNA binding domain	142	243	IPR003340	GO:0003677
	Mepo4g02586	704	SUPERFAMILY	DNA-binding pseudobarrel domain	135	276	IPR015300	-
	Mepo4g02586	704	ProSiteProfiles	PB1 domain profile.	623	704	IPR000270	GO:0005515
	Mepo4g02586	704	Pfam	Auxin response factor	310	393	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Mepo4g02586	704	Gene3D	-	347	421	-	-
	Mepo4g02586	704	Gene3D	-	619	704	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo4g02586	Mepo-Chr4	34400684	34404348	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo4g02586	33	701	B3 DNA Binding Superfamily	AT4G30080	56.741	0.0	698

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Mepo4g02586		B3	3.9e-21	CL0405