Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02578 ATGTCTACCTCTGCAACATCCTTAGTACTTCCATCACTCTTCACCAAAAACTCCCCTCAATTTTTCTCTTCACTCCCTTCTCTTTCCCTCAACCCTAATTTCAAACCCTTTTCCTTTTCCTCTGTTTCTCTTCGTCCATCTTTGTCTATTTCACATCGTTTCATTTCTCGTGTTGCCGTTTCTTCTGAATTTGACCAGGAAGAAGATACCTTTGATGATGGCGATGATACCCCTAGTTACTCTCCTAACCAGAGGTTGTTTGTTGGTAACCTTCCTTTCAGTGTTGACAGTGCTCAACTTGCTGAGATTTTTGAAAACGTTGGGAATGTTGAAATGGTCGAGGTGATTTATGATAAGGCTACTGGAAGAAGCAGGGGATTTGGTTTTGTTACTATGTCTTCTGCTGCGGAAGTTGAAGCGGCTGCTCAGCAGTTGAATGGCTATGTGGTGGATGGAAGAGAATTGAGAGTGAATGCTGGACCACCACCTCCTCGTAGTGAGAACTCCCGTTTCGGTGAGAACTCCCGTTTCGGTGAGAATCCTCGTTTTGGTGGTGATCGTTCAAGAGGTCCTCCAAGAGGTGGTTCTTCAGATGGTGACAACCGTGTTCATGTTGGTAACCTTGCTTGGGGTGTTGACAACTTGGCACTTGAGTCATTGTTTGGTGAACAAGGACAGGTTTTGGAAGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCTAGAGGATTTGGCTTTGTGACTTTCAGCAGCGCTGATGAGGTCAACAGTGCTATTCGAACTTTAGATGGCGCGGATTTGAATGGCAGAGCTATCCGAGTCTCACCTGCAGATAGTAGACCAAAGCGTCAATTTTGA 858 0.4499 MSTSATSLVLPSLFTKNSPQFFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFISRVAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENVGNVEMVEVIYDKATGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPRSENSRFGENSRFGENPRFGGDRSRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVNSAIRTLDGADLNGRAIRVSPADSRPKRQF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02578 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 273 IPR000504 GO:0003723
Mepo4g02578 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Mepo4g02578 285 MobiDBLite consensus disorder prediction 154 202 - -
Mepo4g02578 285 SUPERFAMILY RNA-binding domain, RBD 197 284 IPR035979 GO:0003676
Mepo4g02578 285 SUPERFAMILY RNA-binding domain, RBD 76 190 IPR035979 GO:0003676
Mepo4g02578 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 279 IPR000504 GO:0003723
Mepo4g02578 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Mepo4g02578 285 Gene3D - 58 198 IPR012677 -
Mepo4g02578 285 Gene3D - 199 285 IPR012677 -
Mepo4g02578 285 SMART rrm1_1 202 275 IPR000504 GO:0003723
Mepo4g02578 285 SMART rrm1_1 85 158 IPR000504 GO:0003723
Mepo4g02578 285 CDD RRM2_NsCP33_like 202 277 - -
Mepo4g02578 285 PANTHER OS02G0815200 PROTEIN 15 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02578 Mepo-Chr4 34283190 34285732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02578 86 284 Eukaryotic Initiation Factors Gene Family AT3G16380 29.146 3.42e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02578 - - gmx:100786275 325.479