Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02508 ATGTCCCAAACAACCTGCATTTTCCTAATCTCACTACTTTGTTCCTTTTTCAACCATGGAACATCAATGCTTAACCTCACTCTCCCTGGTCAACATCCAGACCCTGAATCTGTTGCTATAGAAGTTCACAGGAAAGTTAATGTTTCAATGCTAAGAAGGGAAATGCTATCAATATCAAACAAAGAGTTTTCAACATCATGTATAACAGGAAACCCAATAGATGATTGTTGGAAATGTGACACAGATTGGGCCAACAACCGTCAAAGGTTAGCAGATTGTGCAATAGGGTTTGGACAAAATGCCAAAGGAGGAAAAGGTGGCAAATTTTACATTGTCACAGATTCCTCAGACAATGATGCTGTGAATCCAAAACCTGGTACACTTAGATATGCTGTTATACAAAATGAACCACTTTGGATTGTGTTTCCAAGTAACATGATGATTAAGTTGTCTCAAGAACTTATTTTTAATAGCTTCAAAACCATTGATGGTCGTGGTGCTGATGTTCATATTGTTGGTGGTGGTTGCATCACTCTTCAGTATATAAGTAATGTTATTATACATAACATTCATGTTCATCATTGTCATCCCTCAGGTAACACTAACGTGCGTTCGAGTCCAGAACACTACGGCTTTAGAACAGAATCAGACGGAGATGGAATCTCAATATTCGGGTCAAAAGACATATGGATAGACCATTGCACACTCTCACGTTGCAAAGACGGTTTAATAGACGTCGTTATGGGTTCAACAGCAATAACAATCTCCAACAACCATTTCTCACACCACAACGAGGTTATGTTACTAGGTCACAGTGACCACTACAAACCAGACTCAGCAATGCAAGTCACTATAGCATTCAACCATTTTGGTCAACAATTGGTTCAGAGAATGCCACGTTGCAGACTCGGATACATCCACGTGGTGAACAACGATTTTACGAGATGGGAGATGTATGCTATTGGTGGAAGCGGGGGACCAACTATTTTTAGTCAAGGTAACCGGTATACGGCTCCTGAGGATGTTGATGCGAAGCAAGTGACAAAGAGGTTGGATTCTGGTGACAGCGAATGGACTTCATGGAATTGGAAATCTGAAGGCGATGTTATGGCGAATGGAGCTTTTTTTGTTGATTCAGGTGATAAGGGTGAAGGTAGTTTTCAGAAGGCTTATAGTGTTGATCCTAAAGCTGCTGATCGGATTTCTACTCTTACAATGGCTGCTGGTGTTCTTGGTGTTGCTAGGGACAATAATCTAGGAATGTGGACAAGAGCACCAAACGGTGGTGGTGATTATAGTATGTCATATTCTGGAGAAGAAGAGTACACAGATGACATGTCAAAGAGTACAATGTTGTTGACCCATTCTCTTGTAACCCTTTTTGTTGGACTCTTATGTTTGTTGTCACTAACCATAGATCTTTAA 1425 0.4049 MSQTTCIFLISLLCSFFNHGTSMLNLTLPGQHPDPESVAIEVHRKVNVSMLRREMLSISNKEFSTSCITGNPIDDCWKCDTDWANNRQRLADCAIGFGQNAKGGKGGKFYIVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDVVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGQQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTIFSQGNRYTAPEDVDAKQVTKRLDSGDSEWTSWNWKSEGDVMANGAFFVDSGDKGEGSFQKAYSVDPKAADRISTLTMAAGVLGVARDNNLGMWTRAPNGGGDYSMSYSGEEEYTDDMSKSTMLLTHSLVTLFVGLLCLLSLTIDL 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02508 474 SUPERFAMILY Pectin lyase-like 71 400 IPR011050 -
Mepo4g02508 474 SMART amb_all 145 342 IPR002022 -
Mepo4g02508 474 Pfam Pectate lyase 154 334 IPR002022 -
Mepo4g02508 474 Gene3D - 70 412 IPR012334 -
Mepo4g02508 474 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Mepo4g02508 474 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Mepo4g02508 474 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Mepo4g02508 474 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Mepo4g02508 474 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Mepo4g02508 474 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Mepo4g02508 474 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Mepo4g02508 474 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Mepo4g02508 474 PANTHER PECTATE LYASE 18-RELATED 31 414 IPR045032 GO:0030570
Mepo4g02508 474 FunFam Pectate lyase 70 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02508 Mepo-Chr4 33494843 33499752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02508 1 468 Polysaccharide Lyase AT3G53190 69.053 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02508 K01728 - gmx:100815062 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02508 4 33494843 33499752 Mepo4g02508 4 33494843 33499752 ECH
Mepo3g03380 3 43877541 43881399 Mepo4g02508 4 33494843 33499752 PCT